Merge remote-tracking branch 'giteahttps/codex/fix-claude-tool-casing-allowlist' into main

.env.example

@@ -16,6 +16,15 @@ CLAUDE_CODE_OAUTH_TOKEN=
 ANTHROPIC_API_KEY=
 CLAUDE_MODEL=
 CLAUDE_CODE_PATH=
+# Claude binary observability: off | stdout | file | both
+CLAUDE_OBSERVABILITY_MODE=off
+# CLAUDE_OBSERVABILITY_VERBOSITY: summary | full
+CLAUDE_OBSERVABILITY_VERBOSITY=summary
+# Relative to repository workspace root in UI/provider runs.
+CLAUDE_OBSERVABILITY_LOG_PATH=.ai_ops/events/claude-trace.ndjson
+CLAUDE_OBSERVABILITY_INCLUDE_PARTIAL=false
+CLAUDE_OBSERVABILITY_DEBUG=false
+CLAUDE_OBSERVABILITY_DEBUG_LOG_PATH=
 
 # Agent management limits
 AGENT_MAX_CONCURRENT=4
@@ -28,6 +37,7 @@ AGENT_PROJECT_CONTEXT_PATH=.ai_ops/project-context.json
 AGENT_TOPOLOGY_MAX_DEPTH=4
 AGENT_TOPOLOGY_MAX_RETRIES=2
 AGENT_RELATIONSHIP_MAX_CHILDREN=4
+AGENT_MERGE_CONFLICT_MAX_ATTEMPTS=2
 
 # Resource provisioning (hard + soft constraints)
 AGENT_WORKTREE_ROOT=.ai_ops/worktrees

.gitignore

@@ -4,3 +4,4 @@ dist
 mcp.config.json
 .ai_ops
 .agent-context
+.workspace

AGENTS.md

@@ -29,6 +29,7 @@
   - `AGENT_TOPOLOGY_MAX_DEPTH`
   - `AGENT_TOPOLOGY_MAX_RETRIES`
   - `AGENT_RELATIONSHIP_MAX_CHILDREN`
+  - `AGENT_MERGE_CONFLICT_MAX_ATTEMPTS`
 - Provisioning/resource controls:
   - `AGENT_WORKTREE_ROOT`
   - `AGENT_WORKTREE_BASE_REF`

README.md

@@ -20,10 +20,13 @@ TypeScript runtime for deterministic multi-agent execution with:
 - Runtime events are emitted as best-effort side-channel telemetry and do not affect orchestration control flow.
 - `AgentManager` is an internal utility used by the pipeline when fan-out/retry-unrolled behavior is required.
 - Session state is persisted under `AGENT_STATE_ROOT`.
-- Project state is persisted under `AGENT_PROJECT_CONTEXT_PATH` with schema-versioned JSON (`schemaVersion`) and domains:
+- Session lifecycle is explicit (`POST /api/sessions`, `POST /api/sessions/:id/run`, `POST /api/sessions/:id/close`) and each session is bound to a target project path.
+- Session project context is persisted as schema-versioned JSON (`schemaVersion`) with domains:
   - `globalFlags`
   - `artifactPointers`
   - `taskQueue`
+    - each task record stores `taskId`, status, and optional `worktreePath` for task-scoped workspace ownership
+    - conflict-aware statuses are supported (`conflict`, `resolving_conflict`)
 
 ## Deep Dives
 
@@ -92,6 +95,7 @@ The UI provides:
 - graph visualizer with topology/retry rendering, edge trigger labels, node economics (duration/cost/tokens), and critical-path highlighting
 - node inspector with attempt metadata and injected `ResolvedExecutionContext` sandbox payload
 - live runtime event feed from `AGENT_RUNTIME_EVENT_LOG_PATH` with severity coloring (including security mirror events)
+- Claude trace feed from `CLAUDE_OBSERVABILITY_LOG_PATH` (query lifecycle, SDK message types/subtypes, and errors)
 - run trigger + kill switch backed by `SchemaDrivenExecutionEngine.runSession(...)`
   - run mode selector: `provider` (real Codex/Claude execution) or `mock` (deterministic dry-run executor)
   - provider selector: `codex` or `claude`
@@ -105,6 +109,7 @@ Provider mode notes:
 - `provider=codex` uses existing OpenAI/Codex auth settings (`OPENAI_AUTH_MODE`, `CODEX_API_KEY`, `OPENAI_API_KEY`).
 - `provider=claude` uses Claude auth resolution (`CLAUDE_CODE_OAUTH_TOKEN` preferred, otherwise `ANTHROPIC_API_KEY`, or existing Claude Code login state).
 - `CLAUDE_MODEL` should be a Claude model id/alias recognized by Claude Code (for example `claude-sonnet-4-6`); `anthropic/...` prefixes are normalized automatically.
+- Claude provider runs can emit Claude SDK/CLI internals to stdout and/or NDJSON with `CLAUDE_OBSERVABILITY_*` settings.
 
 ## Manifest Semantics
 
@@ -128,9 +133,9 @@ Pipeline edges can route via:
 Domain events are typed and can trigger edges directly:
 
 - planning: `requirements_defined`, `tasks_planned`
-- execution: `code_committed`, `task_blocked`
+- execution: `code_committed`, `task_ready_for_review`, `task_blocked`
 - validation: `validation_passed`, `validation_failed`
-- integration: `branch_merged`
+- integration: `branch_merged`, `merge_conflict_detected`, `merge_conflict_resolved`, `merge_conflict_unresolved`, `merge_retry_started`
 
 Actors can emit events in `ActorExecutionResult.events`. Pipeline status also emits default validation/execution events.
 
@@ -199,6 +204,30 @@ Notes:
   - `security.tool.invocation_allowed`
   - `security.tool.invocation_blocked`
 
+## Claude Observability
+
+- `CLAUDE_OBSERVABILITY_MODE=stdout` prints structured Claude query internals (tool progress, system events, stderr, result lifecycle) to stdout as JSON lines prefixed with `[claude-trace]`.
+- `CLAUDE_OBSERVABILITY_MODE=file` appends the same records to `CLAUDE_OBSERVABILITY_LOG_PATH`.
+- `CLAUDE_OBSERVABILITY_MODE=both` enables both outputs.
+- Output samples high-frequency `tool_progress` events to avoid log flooding while retaining suppression counters.
+- `assistant` and `user` message records are retained so turn flow is inspectable end-to-end.
+- `CLAUDE_OBSERVABILITY_VERBOSITY=summary` stores compact metadata; `full` stores redacted full SDK message payloads.
+- `CLAUDE_OBSERVABILITY_INCLUDE_PARTIAL=true` enables and emits sampled partial assistant stream events from the SDK.
+- `CLAUDE_OBSERVABILITY_DEBUG=true` enables Claude SDK debug mode.
+- `CLAUDE_OBSERVABILITY_DEBUG_LOG_PATH` writes Claude SDK debug output to a file (also enables debug mode).
+- In UI/provider mode, `CLAUDE_OBSERVABILITY_LOG_PATH` resolves relative to the repo workspace root.
+- UI API: `GET /api/claude-trace?limit=<n>&sessionId=<id>` reads filtered Claude trace records.
+
+Example:
+
+```bash
+CLAUDE_OBSERVABILITY_MODE=both
+CLAUDE_OBSERVABILITY_VERBOSITY=summary
+CLAUDE_OBSERVABILITY_LOG_PATH=.ai_ops/events/claude-trace.ndjson
+CLAUDE_OBSERVABILITY_INCLUDE_PARTIAL=false
+CLAUDE_OBSERVABILITY_DEBUG=false
+```
+
 ### Analytics Quick Start
 
 Inspect latest events:
@@ -256,6 +285,12 @@ jq -c 'select(.severity=="critical")' .ai_ops/events/runtime-events.ndjson
 - `ANTHROPIC_API_KEY` (used when `CLAUDE_CODE_OAUTH_TOKEN` is unset)
 - `CLAUDE_MODEL`
 - `CLAUDE_CODE_PATH`
+- `CLAUDE_OBSERVABILITY_MODE` (`off`, `stdout`, `file`, or `both`)
+- `CLAUDE_OBSERVABILITY_VERBOSITY` (`summary` or `full`)
+- `CLAUDE_OBSERVABILITY_LOG_PATH`
+- `CLAUDE_OBSERVABILITY_INCLUDE_PARTIAL` (`true` or `false`)
+- `CLAUDE_OBSERVABILITY_DEBUG` (`true` or `false`)
+- `CLAUDE_OBSERVABILITY_DEBUG_LOG_PATH`
 - `MCP_CONFIG_PATH`
 
 ### Agent Manager Limits
@@ -271,6 +306,7 @@ jq -c 'select(.severity=="critical")' .ai_ops/events/runtime-events.ndjson
 - `AGENT_TOPOLOGY_MAX_DEPTH`
 - `AGENT_TOPOLOGY_MAX_RETRIES`
 - `AGENT_RELATIONSHIP_MAX_CHILDREN`
+- `AGENT_MERGE_CONFLICT_MAX_ATTEMPTS`
 
 ### Provisioning / Resource Controls
 

docs/orchestration-engine.md

@@ -52,10 +52,16 @@ This keeps orchestration policy resolution separate from executor enforcement. E
   - planning: `requirements_defined`, `tasks_planned`
   - execution: `code_committed`, `task_blocked`
   - validation: `validation_passed`, `validation_failed`
-  - integration: `branch_merged`
+  - integration: `branch_merged`, `merge_conflict_detected`, `merge_conflict_resolved`, `merge_conflict_unresolved`, `merge_retry_started`
 - Pipeline edges can trigger on domain events (`edge.event`) in addition to legacy status triggers (`edge.on`).
 - `history_has_event` route conditions evaluate persisted domain event history entries (`validation_failed`, `task_blocked`, etc.).
 
+## Merge conflict orchestration
+
+- Task merge/close merge operations return structured outcomes (`success`, `conflict`, `fatal_error`) instead of throwing for conflicts.
+- Task state supports conflict workflows (`conflict`, `resolving_conflict`) and conflict metadata is persisted under `task.metadata.mergeConflict`.
+- Conflict retries are bounded by `AGENT_MERGE_CONFLICT_MAX_ATTEMPTS`; exhaustion emits `merge_conflict_unresolved` and the session continues without crashing.
+
 ## Security note
 
 Security enforcement now lives in `src/security`:

src/agents/domain-events.ts

@@ -2,9 +2,14 @@ import { randomUUID } from "node:crypto";
 import type { JsonObject } from "./types.js";
 
 export type PlanningDomainEventType = "requirements_defined" | "tasks_planned";
-export type ExecutionDomainEventType = "code_committed" | "task_blocked";
+export type ExecutionDomainEventType = "code_committed" | "task_blocked" | "task_ready_for_review";
 export type ValidationDomainEventType = "validation_passed" | "validation_failed";
-export type IntegrationDomainEventType = "branch_merged";
+export type IntegrationDomainEventType =
+  | "branch_merged"
+  | "merge_conflict_detected"
+  | "merge_conflict_resolved"
+  | "merge_conflict_unresolved"
+  | "merge_retry_started";
 
 export type DomainEventType =
   | PlanningDomainEventType
@@ -46,9 +51,14 @@ const DOMAIN_EVENT_TYPES = new Set<DomainEventType>([
   "tasks_planned",
   "code_committed",
   "task_blocked",
+  "task_ready_for_review",
   "validation_passed",
   "validation_failed",
   "branch_merged",
+  "merge_conflict_detected",
+  "merge_conflict_resolved",
+  "merge_conflict_unresolved",
+  "merge_retry_started",
 ]);
 
 export function isDomainEventType(value: string): value is DomainEventType {

src/agents/lifecycle-observer.ts

@@ -50,10 +50,14 @@ function toNodeAttemptSeverity(status: ActorResultStatus): RuntimeEventSeverity
 }
 
 function toDomainEventSeverity(type: DomainEventType): RuntimeEventSeverity {
-  if (type === "task_blocked") {
+  if (type === "task_blocked" || type === "merge_conflict_unresolved") {
     return "critical";
   }
-  if (type === "validation_failed") {
+  if (
+    type === "validation_failed" ||
+    type === "merge_conflict_detected" ||
+    type === "merge_retry_started"
+  ) {
     return "warning";
   }
   return "info";

src/agents/orchestration.ts

@@ -2,6 +2,7 @@ import { resolve } from "node:path";
 import { getConfig, loadConfig, type AppConfig } from "../config.js";
 import { createDefaultMcpRegistry, loadMcpConfigFromEnv, McpRegistry } from "../mcp.js";
 import { parseAgentManifest, type AgentManifest } from "./manifest.js";
+import type { DomainEventEmission } from "./domain-events.js";
 import { AgentManager } from "./manager.js";
 import {
   PersonaRegistry,
@@ -13,10 +14,16 @@ import {
   type ActorExecutionSecurityContext,
   type ActorExecutor,
   type PipelineRunSummary,
+  type TaskExecutionLifecycle,
 } from "./pipeline.js";
-import { FileSystemProjectContextStore } from "./project-context.js";
+import {
+  FileSystemProjectContextStore,
+  type ProjectTask,
+  type ProjectTaskStatus,
+} from "./project-context.js";
 import { FileSystemStateContextManager, type StoredSessionState } from "./state-context.js";
 import type { JsonObject } from "./types.js";
+import { SessionWorktreeManager, type SessionMetadata } from "./session-lifecycle.js";
 import {
   SecureCommandExecutor,
   type SecurityAuditEvent,
@@ -38,6 +45,7 @@ export type OrchestrationSettings = {
   maxDepth: number;
   maxRetries: number;
   maxChildren: number;
+  mergeConflictMaxAttempts: number;
   securityViolationHandling: "hard_abort" | "validation_fail";
   runtimeContext: Record<string, string | number | boolean>;
 };
@@ -56,6 +64,7 @@ export function loadOrchestrationSettingsFromEnv(
     maxDepth: config.orchestration.maxDepth,
     maxRetries: config.orchestration.maxRetries,
     maxChildren: config.orchestration.maxChildren,
+    mergeConflictMaxAttempts: config.orchestration.mergeConflictMaxAttempts,
     securityViolationHandling: config.security.violationHandling,
   };
 }
@@ -181,6 +190,9 @@ function createActorSecurityContext(input: {
       type: `security.${event.type}`,
       severity: mapSecurityAuditSeverity(event),
       message: toSecurityAuditMessage(event),
+      ...(event.sessionId ? { sessionId: event.sessionId } : {}),
+      ...(event.nodeId ? { nodeId: event.nodeId } : {}),
+      ...(typeof event.attempt === "number" ? { attempt: event.attempt } : {}),
       metadata: toSecurityAuditMetadata(event),
     });
   };
@@ -221,6 +233,57 @@ function createActorSecurityContext(input: {
   };
 }
 
+function resolveSessionProjectContextPath(stateRoot: string, sessionId: string): string {
+  return resolve(stateRoot, sessionId, "project-context.json");
+}
+
+function readTaskIdFromPayload(payload: JsonObject, fallback: string): string {
+  const candidates = [payload.taskId, payload.task_id, payload.task];
+  for (const candidate of candidates) {
+    if (typeof candidate === "string" && candidate.trim().length > 0) {
+      return candidate.trim();
+    }
+  }
+  return fallback;
+}
+
+function toTaskStatusForFailure(
+  resultStatus: "validation_fail" | "failure",
+  statusAtStart: string,
+): ProjectTaskStatus {
+  if (resultStatus === "failure") {
+    return "failed";
+  }
+  if (statusAtStart === "conflict" || statusAtStart === "resolving_conflict") {
+    return "conflict";
+  }
+  return "in_progress";
+}
+
+function shouldMergeFromStatus(statusAtStart: string): boolean {
+  return statusAtStart === "review" || statusAtStart === "resolving_conflict";
+}
+
+function toTaskIdLabel(task: ProjectTask): string {
+  return task.taskId || task.id || "task";
+}
+
+function toJsonObject(value: unknown): JsonObject | undefined {
+  if (!value || typeof value !== "object" || Array.isArray(value)) {
+    return undefined;
+  }
+  return value as JsonObject;
+}
+
+function readMergeConflictAttempts(metadata: JsonObject | undefined): number {
+  const record = toJsonObject(metadata?.mergeConflict);
+  const attempts = record?.attempts;
+  if (typeof attempts === "number" && Number.isInteger(attempts) && attempts >= 0) {
+    return attempts;
+  }
+  return 0;
+}
+
 export class SchemaDrivenExecutionEngine {
   private readonly manifest: AgentManifest;
   private readonly personaRegistry = new PersonaRegistry();
@@ -234,6 +297,7 @@ export class SchemaDrivenExecutionEngine {
   private readonly mcpRegistry: McpRegistry;
   private readonly runtimeEventPublisher: RuntimeEventPublisher;
   private readonly securityContext: ActorExecutionSecurityContext;
+  private readonly sessionWorktreeManager: SessionWorktreeManager;
 
   constructor(input: {
     manifest: AgentManifest | unknown;
@@ -260,6 +324,8 @@ export class SchemaDrivenExecutionEngine {
       maxDepth: input.settings?.maxDepth ?? config.orchestration.maxDepth,
       maxRetries: input.settings?.maxRetries ?? config.orchestration.maxRetries,
       maxChildren: input.settings?.maxChildren ?? config.orchestration.maxChildren,
+      mergeConflictMaxAttempts:
+        input.settings?.mergeConflictMaxAttempts ?? config.orchestration.mergeConflictMaxAttempts,
       securityViolationHandling:
         input.settings?.securityViolationHandling ?? config.security.violationHandling,
       runtimeContext: {
@@ -273,6 +339,10 @@ export class SchemaDrivenExecutionEngine {
     this.projectContextStore = new FileSystemProjectContextStore({
       filePath: this.settings.projectContextPath,
     });
+    this.sessionWorktreeManager = new SessionWorktreeManager({
+      worktreeRoot: resolve(this.settings.workspaceRoot, this.config.provisioning.gitWorktree.rootDirectory),
+      baseRef: this.config.provisioning.gitWorktree.baseRef,
+    });
 
     this.actorExecutors = toExecutorMap(input.actorExecutors);
     this.manager =
@@ -352,9 +422,22 @@ export class SchemaDrivenExecutionEngine {
     initialPayload: JsonObject;
     initialState?: Partial<StoredSessionState>;
     signal?: AbortSignal;
+    sessionMetadata?: SessionMetadata;
   }): Promise<PipelineRunSummary> {
     const managerSessionId = `${input.sessionId}__pipeline`;
     const managerSession = this.manager.createSession(managerSessionId);
+    const workspaceRoot = input.sessionMetadata?.baseWorkspacePath ?? this.settings.workspaceRoot;
+    const projectContextStore = input.sessionMetadata
+      ? new FileSystemProjectContextStore({
+          filePath: resolveSessionProjectContextPath(this.settings.stateRoot, input.sessionId),
+        })
+      : this.projectContextStore;
+    const taskLifecycle = input.sessionMetadata
+      ? this.createTaskExecutionLifecycle({
+          session: input.sessionMetadata,
+          projectContextStore,
+        })
+      : undefined;
 
     const executor = new PipelineExecutor(
       this.manifest,
@@ -362,25 +445,26 @@ export class SchemaDrivenExecutionEngine {
       this.stateManager,
       this.actorExecutors,
       {
-        workspaceRoot: this.settings.workspaceRoot,
+        workspaceRoot,
         runtimeContext: this.settings.runtimeContext,
         defaultModelConstraint: this.config.provider.claudeModel,
         resolvedExecutionSecurityConstraints: {
           dropUid: this.config.security.dropUid !== undefined,
           dropGid: this.config.security.dropGid !== undefined,
-          worktreePath: this.settings.workspaceRoot,
+          worktreePath: workspaceRoot,
           violationMode: this.settings.securityViolationHandling,
         },
         maxDepth: Math.min(this.settings.maxDepth, this.manifest.topologyConstraints.maxDepth),
         maxRetries: Math.min(this.settings.maxRetries, this.manifest.topologyConstraints.maxRetries),
         manager: this.manager,
         managerSessionId,
-        projectContextStore: this.projectContextStore,
+        projectContextStore,
-        resolveMcpConfig: ({ providerHint, prompt, toolClearance }) =>
+        resolveMcpConfig: ({ providerHint, prompt, toolClearance, workingDirectory }) =>
           loadMcpConfigFromEnv(
             {
               providerHint,
               prompt,
+              ...(workingDirectory ? { workingDirectory } : {}),
             },
             {
               config: this.config,
@@ -391,6 +475,7 @@ export class SchemaDrivenExecutionEngine {
         securityViolationHandling: this.settings.securityViolationHandling,
         securityContext: this.securityContext,
         runtimeEventPublisher: this.runtimeEventPublisher,
+        ...(taskLifecycle ? { taskLifecycle } : {}),
       },
     );
     try {
@@ -405,6 +490,334 @@ export class SchemaDrivenExecutionEngine {
     }
   }
 
+  private createTaskExecutionLifecycle(input: {
+    session: SessionMetadata;
+    projectContextStore: FileSystemProjectContextStore;
+  }): TaskExecutionLifecycle {
+    return {
+      prepareTaskExecution: async ({ node, context }) => {
+        const taskId = readTaskIdFromPayload(context.handoff.payload, node.id);
+        const projectContext = await input.projectContextStore.readState();
+        const existing = projectContext.taskQueue.find(
+          (task) => toTaskIdLabel(task) === taskId,
+        );
+
+        const ensured = await this.sessionWorktreeManager.ensureTaskWorktree({
+          sessionId: input.session.sessionId,
+          taskId,
+          baseWorkspacePath: input.session.baseWorkspacePath,
+          ...(existing?.worktreePath ? { existingWorktreePath: existing.worktreePath } : {}),
+        });
+
+        const statusAtStart: ProjectTaskStatus =
+          existing?.status === "review" ||
+          existing?.status === "conflict" ||
+          existing?.status === "resolving_conflict"
+            ? existing.status
+            : "in_progress";
+
+        await input.projectContextStore.patchState({
+          upsertTasks: [
+            {
+              taskId,
+              id: taskId,
+              status: statusAtStart,
+              worktreePath: ensured.taskWorktreePath,
+              ...(existing?.title ? { title: existing.title } : { title: taskId }),
+              ...(existing?.metadata ? { metadata: existing.metadata } : {}),
+            },
+          ],
+        });
+
+        return {
+          taskId,
+          worktreePath: ensured.taskWorktreePath,
+          statusAtStart,
+          ...(existing?.metadata ? { metadata: existing.metadata } : {}),
+        };
+      },
+      finalizeTaskExecution: async ({ task, result, domainEvents }) => {
+        const emittedTypes = new Set(domainEvents.map((event) => event.type));
+        const additionalEvents: DomainEventEmission[] = [];
+        const emitEvent = (
+          type: DomainEventEmission["type"],
+          payload?: DomainEventEmission["payload"],
+        ): void => {
+          if (emittedTypes.has(type)) {
+            return;
+          }
+          emittedTypes.add(type);
+          additionalEvents.push(payload ? { type, payload } : { type });
+        };
+
+        if (result.status === "failure" || result.status === "validation_fail") {
+          await input.projectContextStore.patchState({
+            upsertTasks: [
+              {
+                taskId: task.taskId,
+                id: task.taskId,
+                status: toTaskStatusForFailure(result.status, task.statusAtStart),
+                worktreePath: task.worktreePath,
+                title: task.taskId,
+                ...(task.metadata ? { metadata: task.metadata } : {}),
+              },
+            ],
+          });
+          return;
+        }
+
+        if (task.statusAtStart === "conflict") {
+          const attempts = readMergeConflictAttempts(task.metadata);
+          const metadata: JsonObject = {
+            ...(task.metadata ?? {}),
+            mergeConflict: {
+              attempts,
+              maxAttempts: this.settings.mergeConflictMaxAttempts,
+              status: "resolved",
+              resolvedAt: new Date().toISOString(),
+            },
+          };
+          await input.projectContextStore.patchState({
+            upsertTasks: [
+              {
+                taskId: task.taskId,
+                id: task.taskId,
+                status: "resolving_conflict",
+                worktreePath: task.worktreePath,
+                title: task.taskId,
+                metadata,
+              },
+            ],
+          });
+
+          emitEvent("merge_conflict_resolved", {
+            summary: `Merge conflicts resolved for task "${task.taskId}".`,
+            details: {
+              taskId: task.taskId,
+              worktreePath: task.worktreePath,
+              attempts,
+            },
+          });
+
+          return {
+            additionalEvents,
+            handoffPayloadPatch: {
+              taskId: task.taskId,
+              worktreePath: task.worktreePath,
+              mergeConflictStatus: "resolved",
+              mergeConflictAttempts: attempts,
+            } as JsonObject,
+          };
+        }
+
+        if (shouldMergeFromStatus(task.statusAtStart)) {
+          const attemptsBeforeMerge = readMergeConflictAttempts(task.metadata);
+          if (task.statusAtStart === "resolving_conflict") {
+            emitEvent("merge_retry_started", {
+              summary: `Retrying merge for task "${task.taskId}".`,
+              details: {
+                taskId: task.taskId,
+                worktreePath: task.worktreePath,
+                nextAttempt: attemptsBeforeMerge + 1,
+                maxAttempts: this.settings.mergeConflictMaxAttempts,
+              },
+            });
+          }
+
+          const mergeOutcome = await this.sessionWorktreeManager.mergeTaskIntoBase({
+            taskId: task.taskId,
+            baseWorkspacePath: input.session.baseWorkspacePath,
+            taskWorktreePath: task.worktreePath,
+          });
+
+          if (mergeOutcome.kind === "success") {
+            await input.projectContextStore.patchState({
+              upsertTasks: [
+                {
+                  taskId: task.taskId,
+                  id: task.taskId,
+                  status: "merged",
+                  title: task.taskId,
+                  metadata: {
+                    ...(task.metadata ?? {}),
+                    mergeConflict: {
+                      attempts: attemptsBeforeMerge,
+                      maxAttempts: this.settings.mergeConflictMaxAttempts,
+                      status: "merged",
+                      mergedAt: new Date().toISOString(),
+                    },
+                  },
+                },
+              ],
+            });
+
+            emitEvent("branch_merged", {
+              summary: `Task "${task.taskId}" merged into session base branch.`,
+              details: {
+                taskId: task.taskId,
+                worktreePath: task.worktreePath,
+              },
+            });
+
+            return {
+              additionalEvents,
+              handoffPayloadPatch: {
+                taskId: task.taskId,
+                mergeStatus: "merged",
+              } as JsonObject,
+            };
+          }
+
+          if (mergeOutcome.kind === "conflict") {
+            const attempts = attemptsBeforeMerge + 1;
+            const exhausted = attempts >= this.settings.mergeConflictMaxAttempts;
+            const metadata: JsonObject = {
+              ...(task.metadata ?? {}),
+              mergeConflict: {
+                attempts,
+                maxAttempts: this.settings.mergeConflictMaxAttempts,
+                status: exhausted ? "unresolved" : "conflict",
+                conflictFiles: mergeOutcome.conflictFiles,
+                worktreePath: mergeOutcome.worktreePath,
+                detectedAt: new Date().toISOString(),
+                ...(mergeOutcome.mergeBase ? { mergeBase: mergeOutcome.mergeBase } : {}),
+              },
+            };
+
+            await input.projectContextStore.patchState({
+              upsertTasks: [
+                {
+                  taskId: task.taskId,
+                  id: task.taskId,
+                  status: "conflict",
+                  worktreePath: task.worktreePath,
+                  title: task.taskId,
+                  metadata,
+                },
+              ],
+            });
+
+            emitEvent("merge_conflict_detected", {
+              summary: `Merge conflict detected for task "${task.taskId}".`,
+              details: {
+                taskId: task.taskId,
+                worktreePath: mergeOutcome.worktreePath,
+                conflictFiles: mergeOutcome.conflictFiles,
+                attempts,
+                maxAttempts: this.settings.mergeConflictMaxAttempts,
+                ...(mergeOutcome.mergeBase ? { mergeBase: mergeOutcome.mergeBase } : {}),
+              },
+            });
+
+            if (exhausted) {
+              emitEvent("merge_conflict_unresolved", {
+                summary:
+                  `Merge conflict attempts exhausted for task "${task.taskId}" ` +
+                  `(${String(attempts)}/${String(this.settings.mergeConflictMaxAttempts)}).`,
+                details: {
+                  taskId: task.taskId,
+                  worktreePath: mergeOutcome.worktreePath,
+                  conflictFiles: mergeOutcome.conflictFiles,
+                  attempts,
+                  maxAttempts: this.settings.mergeConflictMaxAttempts,
+                },
+              });
+            }
+
+            return {
+              additionalEvents,
+              handoffPayloadPatch: {
+                taskId: task.taskId,
+                worktreePath: task.worktreePath,
+                mergeConflictStatus: exhausted ? "unresolved" : "conflict",
+                mergeConflictAttempts: attempts,
+                mergeConflictMaxAttempts: this.settings.mergeConflictMaxAttempts,
+                mergeConflictFiles: mergeOutcome.conflictFiles,
+                ...(mergeOutcome.mergeBase ? { mergeBase: mergeOutcome.mergeBase } : {}),
+              } as JsonObject,
+            };
+          }
+
+          await input.projectContextStore.patchState({
+            upsertTasks: [
+              {
+                taskId: task.taskId,
+                id: task.taskId,
+                status: "failed",
+                worktreePath: task.worktreePath,
+                title: task.taskId,
+                metadata: {
+                  ...(task.metadata ?? {}),
+                  mergeConflict: {
+                    attempts: attemptsBeforeMerge,
+                    maxAttempts: this.settings.mergeConflictMaxAttempts,
+                    status: "fatal_error",
+                    error: mergeOutcome.error,
+                    ...(mergeOutcome.mergeBase ? { mergeBase: mergeOutcome.mergeBase } : {}),
+                  },
+                },
+              },
+            ],
+          });
+
+          emitEvent("merge_conflict_unresolved", {
+            summary: `Fatal merge error for task "${task.taskId}".`,
+            details: {
+              taskId: task.taskId,
+              worktreePath: mergeOutcome.worktreePath,
+              error: mergeOutcome.error,
+              ...(mergeOutcome.mergeBase ? { mergeBase: mergeOutcome.mergeBase } : {}),
+            },
+          });
+          emitEvent("task_blocked", {
+            summary: `Task "${task.taskId}" blocked due to fatal merge error.`,
+            details: {
+              taskId: task.taskId,
+              error: mergeOutcome.error,
+            },
+          });
+
+          return {
+            additionalEvents,
+            handoffPayloadPatch: {
+              taskId: task.taskId,
+              worktreePath: task.worktreePath,
+              mergeStatus: "fatal_error",
+              mergeError: mergeOutcome.error,
+            } as JsonObject,
+          };
+        }
+
+        const nextMetadata = task.metadata
+          ? {
+              ...task.metadata,
+            }
+          : undefined;
+
+        await input.projectContextStore.patchState({
+          upsertTasks: [
+            {
+              taskId: task.taskId,
+              id: task.taskId,
+              status: "review",
+              worktreePath: task.worktreePath,
+              title: task.taskId,
+              ...(nextMetadata ? { metadata: nextMetadata } : {}),
+            },
+          ],
+        });
+
+        if (additionalEvents.length > 0) {
+          return {
+            additionalEvents,
+          };
+        }
+
+        return;
+      },
+    };
+  }
+
   private assertRelationshipConstraints(): void {
     for (const [parent, edges] of this.childrenByParent.entries()) {
       if (edges.length > this.settings.maxChildren) {

src/agents/pipeline.ts

@@ -107,6 +107,8 @@ export type ResolvedExecutionContext = {
 
 export type ActorExecutionInput = {
   sessionId: string;
+  attempt: number;
+  depth: number;
   node: PipelineNode;
   prompt: string;
   context: NodeExecutionContext;
@@ -153,6 +155,7 @@ export type PipelineExecutorOptions = {
   securityViolationHandling?: SecurityViolationHandling;
   securityContext?: ActorExecutionSecurityContext;
   runtimeEventPublisher?: RuntimeEventPublisher;
+  taskLifecycle?: TaskExecutionLifecycle;
 };
 
 export type ActorExecutionSecurityContext = {
@@ -166,6 +169,34 @@ export type ActorExecutionSecurityContext = {
   }) => SecureCommandExecutor;
 };
 
+export type TaskExecutionResolution = {
+  taskId: string;
+  worktreePath: string;
+  statusAtStart: string;
+  metadata?: JsonObject;
+};
+
+export type TaskExecutionLifecycle = {
+  prepareTaskExecution: (input: {
+    sessionId: string;
+    node: PipelineNode;
+    context: NodeExecutionContext;
+  }) => Promise<TaskExecutionResolution>;
+  finalizeTaskExecution: (input: {
+    sessionId: string;
+    node: PipelineNode;
+    task: TaskExecutionResolution;
+    result: ActorExecutionResult;
+    domainEvents: DomainEvent[];
+  }) => Promise<
+    | void
+    | {
+        additionalEvents?: DomainEventEmission[];
+        handoffPayloadPatch?: JsonObject;
+      }
+  >;
+};
+
 type QueueItem = {
   nodeId: string;
   depth: number;
@@ -612,9 +643,11 @@ export class PipelineExecutor {
             globalFlags: { ...projectContext.globalFlags },
             artifactPointers: { ...projectContext.artifactPointers },
             taskQueue: projectContext.taskQueue.map((task) => ({
-              id: task.id,
+              taskId: task.taskId,
-              title: task.title,
+              id: task.id ?? task.taskId,
+              ...(task.title ? { title: task.title } : {}),
               status: task.status,
+              ...(task.worktreePath ? { worktreePath: task.worktreePath } : {}),
               ...(task.assignee ? { assignee: task.assignee } : {}),
               ...(task.metadata ? { metadata: task.metadata } : {}),
             })),
@@ -886,6 +919,13 @@ export class PipelineExecutor {
           })();
 
           const context = await this.stateManager.buildFreshNodeContext(sessionId, node.id);
+          const taskResolution = this.options.taskLifecycle
+            ? await this.options.taskLifecycle.prepareTaskExecution({
+                sessionId,
+                node,
+                context,
+              })
+            : undefined;
           const prompt = this.personaRegistry.renderSystemPrompt({
             personaId: node.personaId,
             runtimeContext: {
@@ -901,10 +941,13 @@ export class PipelineExecutor {
             node,
             toolClearance,
             prompt,
+            worktreePathOverride: taskResolution?.worktreePath,
           });
 
           const result = await this.invokeActorExecutor({
             sessionId,
+            attempt,
+            depth: recursiveDepth,
             node,
             prompt,
             context,
@@ -921,12 +964,49 @@ export class PipelineExecutor {
             customEvents: result.events,
           });
           const topologyKind: NodeTopologyKind = node.topology?.kind ?? "sequential";
-          const payloadForNext = result.payload ?? context.handoff.payload;
+          let payloadForNext: JsonObject = {
+            ...context.handoff.payload,
+            ...(result.payload ?? {}),
+            ...(taskResolution
+              ? {
+                  taskId: taskResolution.taskId,
+                  worktreePath: taskResolution.worktreePath,
+                }
+              : {}),
+          };
           const shouldRetry =
             result.status === "validation_fail" &&
             this.shouldRetryValidation(node) &&
             attempt <= maxRetriesForNode;
 
+          if (taskResolution && this.options.taskLifecycle) {
+            const finalization = await this.options.taskLifecycle.finalizeTaskExecution({
+              sessionId,
+              node,
+              task: taskResolution,
+              result,
+              domainEvents,
+            });
+            for (const eventEmission of finalization?.additionalEvents ?? []) {
+              domainEvents.push(
+                createDomainEvent({
+                  type: eventEmission.type,
+                  source: "pipeline",
+                  sessionId,
+                  nodeId: node.id,
+                  attempt,
+                  payload: eventEmission.payload,
+                }),
+              );
+            }
+            if (finalization?.handoffPayloadPatch) {
+              payloadForNext = {
+                ...payloadForNext,
+                ...finalization.handoffPayloadPatch,
+              };
+            }
+          }
+
           await this.lifecycleObserver.onNodeAttempt({
             sessionId,
             node,
@@ -1021,6 +1101,8 @@ export class PipelineExecutor {
 
   private async invokeActorExecutor(input: {
     sessionId: string;
+    attempt: number;
+    depth: number;
     node: PipelineNode;
     prompt: string;
     context: NodeExecutionContext;
@@ -1033,12 +1115,20 @@ export class PipelineExecutor {
 
       return await input.executor({
         sessionId: input.sessionId,
+        attempt: input.attempt,
+        depth: input.depth,
         node: input.node,
         prompt: input.prompt,
         context: input.context,
         signal: input.signal,
         executionContext: input.executionContext,
-        mcp: this.buildActorMcpContext(input.executionContext, input.prompt),
+        mcp: this.buildActorMcpContext({
+          sessionId: input.sessionId,
+          nodeId: input.node.id,
+          attempt: input.attempt,
+          executionContext: input.executionContext,
+          prompt: input.prompt,
+        }),
         security: this.securityContext,
       });
     } catch (error) {
@@ -1079,9 +1169,15 @@ export class PipelineExecutor {
     node: PipelineNode;
     toolClearance: ToolClearancePolicy;
     prompt: string;
+    worktreePathOverride?: string;
   }): ResolvedExecutionContext {
     const normalizedToolClearance = parseToolClearancePolicy(input.toolClearance);
-    const toolUniverse = this.resolveAvailableToolsForAttempt(normalizedToolClearance, input.prompt);
+    const worktreePath = input.worktreePathOverride ?? this.options.resolvedExecutionSecurityConstraints.worktreePath;
+    const toolUniverse = this.resolveAvailableToolsForAttempt({
+      toolClearance: normalizedToolClearance,
+      prompt: input.prompt,
+      worktreePath,
+    });
     const allowedTools = this.resolveAllowedToolsForAttempt({
       toolClearance: normalizedToolClearance,
       toolUniverse,
@@ -1097,6 +1193,7 @@ export class PipelineExecutor {
       allowedTools,
       security: {
         ...this.options.resolvedExecutionSecurityConstraints,
+        worktreePath,
       },
     };
   }
@@ -1119,15 +1216,20 @@ export class PipelineExecutor {
     return [];
   }
 
-  private resolveAvailableToolsForAttempt(toolClearance: ToolClearancePolicy, prompt: string): string[] {
+  private resolveAvailableToolsForAttempt(input: {
+    toolClearance: ToolClearancePolicy;
+    prompt: string;
+    worktreePath: string;
+  }): string[] {
     if (!this.options.resolveMcpConfig) {
       return [];
     }
 
     const resolved = this.options.resolveMcpConfig({
       providerHint: "codex",
-      prompt,
+      prompt: input.prompt,
-      toolClearance,
+      workingDirectory: input.worktreePath,
+      toolClearance: input.toolClearance,
     });
 
     const rawServers = resolved.codexConfig?.mcp_servers;
@@ -1147,10 +1249,14 @@ export class PipelineExecutor {
     return dedupeStrings(tools);
   }
 
-  private buildActorMcpContext(
+  private buildActorMcpContext(input: {
-    executionContext: ResolvedExecutionContext,
+    sessionId: string;
-    prompt: string,
+    nodeId: string;
-  ): ActorExecutionMcpContext {
+    attempt: number;
+    executionContext: ResolvedExecutionContext;
+    prompt: string;
+  }): ActorExecutionMcpContext {
+    const { executionContext, prompt } = input;
     const toolPolicy = toAllowedToolPolicy(executionContext.allowedTools);
     const filterToolsForProvider = (tools: string[]): string[] => {
       const deduped = dedupeStrings(tools);
@@ -1161,6 +1267,7 @@ export class PipelineExecutor {
       ? this.options.resolveMcpConfig({
           providerHint: "both",
           prompt,
+          workingDirectory: executionContext.security.worktreePath,
           toolClearance: toolPolicy,
         })
       : {};
@@ -1169,7 +1276,12 @@ export class PipelineExecutor {
       executionContext.allowedTools,
     );
     const resolveConfig = (context: McpLoadContext = {}): LoadedMcpConfig => {
-      if (context.providerHint === "codex") {
+      const withWorkingDirectory: McpLoadContext = {
+        ...context,
+        ...(context.workingDirectory ? {} : { workingDirectory: executionContext.security.worktreePath }),
+      };
+
+      if (withWorkingDirectory.providerHint === "codex") {
         return {
           ...(resolvedConfig.codexConfig ? { codexConfig: cloneMcpConfig(resolvedConfig).codexConfig } : {}),
           ...(resolvedConfig.sourcePath ? { sourcePath: resolvedConfig.sourcePath } : {}),
@@ -1179,7 +1291,7 @@ export class PipelineExecutor {
         };
       }
 
-      if (context.providerHint === "claude") {
+      if (withWorkingDirectory.providerHint === "claude") {
         return {
           ...(resolvedConfig.claudeMcpServers
             ? { claudeMcpServers: cloneMcpConfig(resolvedConfig).claudeMcpServers }
@@ -1195,7 +1307,12 @@ export class PipelineExecutor {
     };
 
     const createToolPermissionHandler = (): ActorToolPermissionHandler =>
-      this.createToolPermissionHandler(executionContext.allowedTools);
+      this.createToolPermissionHandler({
+        allowedTools: executionContext.allowedTools,
+        sessionId: input.sessionId,
+        nodeId: input.nodeId,
+        attempt: input.attempt,
+      });
 
     return {
       allowedTools: [...executionContext.allowedTools],
@@ -1207,11 +1324,21 @@ export class PipelineExecutor {
     };
   }
 
-  private createToolPermissionHandler(allowedTools: readonly string[]): ActorToolPermissionHandler {
+  private createToolPermissionHandler(input: {
-    const allowset = new Set(allowedTools);
+    allowedTools: readonly string[];
-    const caseInsensitiveAllowLookup = buildCaseInsensitiveToolLookup(allowedTools);
+    sessionId: string;
+    nodeId: string;
+    attempt: number;
+  }): ActorToolPermissionHandler {
+    const allowset = new Set(input.allowedTools);
+    const caseInsensitiveAllowLookup = buildCaseInsensitiveToolLookup(input.allowedTools);
     const rulesEngine = this.securityContext?.rulesEngine;
-    const toolPolicy = toAllowedToolPolicy(allowedTools);
+    const toolPolicy = toAllowedToolPolicy(input.allowedTools);
+    const toolAuditContext = {
+      sessionId: input.sessionId,
+      nodeId: input.nodeId,
+      attempt: input.attempt,
+    };
 
     return async (toolName, _input, options) => {
       const toolUseID = options.toolUseID;
@@ -1234,6 +1361,7 @@ export class PipelineExecutor {
         rulesEngine?.assertToolInvocationAllowed({
           tool: candidates[0] ?? toolName,
           toolClearance: toolPolicy,
+          context: toolAuditContext,
         });
         return {
           behavior: "deny",
@@ -1246,6 +1374,7 @@ export class PipelineExecutor {
       rulesEngine?.assertToolInvocationAllowed({
         tool: allowMatch,
         toolClearance: toolPolicy,
+        context: toolAuditContext,
       });
 
       return {

src/agents/project-context.ts

@@ -5,12 +5,23 @@ import { deepCloneJson, isRecord, type JsonObject, type JsonValue } from "./type
 
 export const PROJECT_CONTEXT_SCHEMA_VERSION = 1;
 
-export type ProjectTaskStatus = "pending" | "in_progress" | "blocked" | "done";
+export type ProjectTaskStatus =
+  | "pending"
+  | "in_progress"
+  | "review"
+  | "conflict"
+  | "resolving_conflict"
+  | "merged"
+  | "failed"
+  | "blocked"
+  | "done";
 
 export type ProjectTask = {
-  id: string;
+  taskId: string;
-  title: string;
+  id?: string;
+  title?: string;
   status: ProjectTaskStatus;
+  worktreePath?: string;
   assignee?: string;
   metadata?: JsonObject;
 };
@@ -52,7 +63,17 @@ function toJsonObject(value: unknown, label: string): JsonObject {
 }
 
 function toTaskStatus(value: unknown, label: string): ProjectTaskStatus {
-  if (value === "pending" || value === "in_progress" || value === "blocked" || value === "done") {
+  if (
+    value === "pending" ||
+    value === "in_progress" ||
+    value === "review" ||
+    value === "conflict" ||
+    value === "resolving_conflict" ||
+    value === "merged" ||
+    value === "failed" ||
+    value === "blocked" ||
+    value === "done"
+  ) {
     return value;
   }
   throw new Error(`${label} has unsupported status "${String(value)}".`);
@@ -68,10 +89,28 @@ function toProjectTask(value: unknown, label: string): ProjectTask {
     throw new Error(`${label}.assignee must be a non-empty string when provided.`);
   }
 
+  const taskIdCandidate = value.taskId ?? value.id;
+  const taskId = assertNonEmptyString(taskIdCandidate, `${label}.taskId`);
+
+  const titleRaw = value.title;
+  if (titleRaw !== undefined && (typeof titleRaw !== "string" || titleRaw.trim().length === 0)) {
+    throw new Error(`${label}.title must be a non-empty string when provided.`);
+  }
+
+  const worktreePathRaw = value.worktreePath;
+  if (
+    worktreePathRaw !== undefined &&
+    (typeof worktreePathRaw !== "string" || worktreePathRaw.trim().length === 0)
+  ) {
+    throw new Error(`${label}.worktreePath must be a non-empty string when provided.`);
+  }
+
   return {
-    id: assertNonEmptyString(value.id, `${label}.id`),
+    taskId,
-    title: assertNonEmptyString(value.title, `${label}.title`),
+    id: taskId,
+    ...(typeof titleRaw === "string" ? { title: titleRaw.trim() } : {}),
     status: toTaskStatus(value.status, `${label}.status`),
+    ...(typeof worktreePathRaw === "string" ? { worktreePath: worktreePathRaw.trim() } : {}),
     ...(typeof assignee === "string" ? { assignee: assignee.trim() } : {}),
     ...(value.metadata !== undefined
       ? { metadata: toJsonObject(value.metadata, `${label}.metadata`) }
@@ -157,10 +196,10 @@ function mergeUpsertTasks(current: ProjectTask[], upserts: ProjectTask[]): Proje
 
   const byId = new Map<string, ProjectTask>();
   for (const task of current) {
-    byId.set(task.id, task);
+    byId.set(task.taskId, task);
   }
   for (const task of upserts) {
-    byId.set(task.id, task);
+    byId.set(task.taskId, task);
   }
 
   return [...byId.values()];

src/agents/provisioning.ts

@@ -197,9 +197,9 @@ export class ResourceProvisioningOrchestrator {
   async provisionSession(input: {
     sessionId: string;
     resources: ResourceRequest[];
-    workspaceRoot?: string;
+    workspaceRoot: string;
   }): Promise<ProvisionedResources> {
-    const workspaceRoot = resolve(input.workspaceRoot ?? process.cwd());
+    const workspaceRoot = resolve(input.workspaceRoot);
     const hardConstraints: ProvisionedResourcesState["hardConstraints"] = [];
     const releases: ProvisionedResourcesState["releases"] = [];
     const env: Record<string, string> = {};

src/agents/session-lifecycle.ts

@@ -0,0 +1,783 @@
+import { execFile } from "node:child_process";
+import { randomUUID } from "node:crypto";
+import { mkdir, readFile, readdir, stat } from "node:fs/promises";
+import { dirname, isAbsolute, resolve } from "node:path";
+import { promisify } from "node:util";
+import { withFileLock, writeUtf8FileAtomic } from "./file-persistence.js";
+
+const execFileAsync = promisify(execFile);
+
+const SESSION_METADATA_FILE_NAME = "session-metadata.json";
+
+export type SessionStatus = "active" | "suspended" | "closed" | "closed_with_conflicts";
+
+export type SessionMetadata = {
+  sessionId: string;
+  projectPath: string;
+  sessionStatus: SessionStatus;
+  baseWorkspacePath: string;
+  createdAt: string;
+  updatedAt: string;
+};
+
+export type CreateSessionRequest = {
+  projectPath: string;
+};
+
+export type MergeTaskIntoBaseOutcome =
+  | {
+      kind: "success";
+      taskId: string;
+      worktreePath: string;
+      baseWorkspacePath: string;
+    }
+  | {
+      kind: "conflict";
+      taskId: string;
+      worktreePath: string;
+      baseWorkspacePath: string;
+      conflictFiles: string[];
+      mergeBase?: string;
+    }
+  | {
+      kind: "fatal_error";
+      taskId: string;
+      worktreePath: string;
+      baseWorkspacePath: string;
+      error: string;
+      mergeBase?: string;
+    };
+
+export type CloseSessionOutcome =
+  | {
+      kind: "success";
+      sessionId: string;
+      mergedToProject: boolean;
+    }
+  | {
+      kind: "conflict";
+      sessionId: string;
+      worktreePath: string;
+      conflictFiles: string[];
+      mergeBase?: string;
+      baseBranch?: string;
+    }
+  | {
+      kind: "fatal_error";
+      sessionId: string;
+      error: string;
+      baseBranch?: string;
+      mergeBase?: string;
+    };
+
+type GitExecutionResult = {
+  exitCode: number;
+  stdout: string;
+  stderr: string;
+};
+
+type GitWorktreeRecord = {
+  path: string;
+  branchRef?: string;
+};
+
+function toErrorMessage(error: unknown): string {
+  if (error instanceof Error) {
+    return error.message;
+  }
+  return String(error);
+}
+
+function assertAbsolutePath(path: string, label: string): string {
+  if (!isAbsolute(path)) {
+    throw new Error(`${label} must be an absolute path.`);
+  }
+  return resolve(path);
+}
+
+function assertNonEmptyString(value: unknown, label: string): string {
+  if (typeof value !== "string" || value.trim().length === 0) {
+    throw new Error(`${label} must be a non-empty string.`);
+  }
+  return value.trim();
+}
+
+function toSessionStatus(value: unknown): SessionStatus {
+  if (
+    value === "active" ||
+    value === "suspended" ||
+    value === "closed" ||
+    value === "closed_with_conflicts"
+  ) {
+    return value;
+  }
+  throw new Error(`Session status "${String(value)}" is not supported.`);
+}
+
+function toSessionMetadata(value: unknown): SessionMetadata {
+  if (!value || typeof value !== "object" || Array.isArray(value)) {
+    throw new Error("Session metadata file is malformed.");
+  }
+
+  const raw = value as Record<string, unknown>;
+
+  return {
+    sessionId: assertNonEmptyString(raw.sessionId, "sessionId"),
+    projectPath: assertAbsolutePath(assertNonEmptyString(raw.projectPath, "projectPath"), "projectPath"),
+    baseWorkspacePath: assertAbsolutePath(
+      assertNonEmptyString(raw.baseWorkspacePath, "baseWorkspacePath"),
+      "baseWorkspacePath",
+    ),
+    sessionStatus: toSessionStatus(raw.sessionStatus),
+    createdAt: assertNonEmptyString(raw.createdAt, "createdAt"),
+    updatedAt: assertNonEmptyString(raw.updatedAt, "updatedAt"),
+  };
+}
+
+async function runGit(args: string[]): Promise<string> {
+  const result = await runGitWithResult(args);
+  if (result.exitCode !== 0) {
+    throw new Error(`git ${args.join(" ")} failed: ${result.stderr || result.stdout || "unknown git error"}`);
+  }
+  return result.stdout.trim();
+}
+
+async function runGitWithResult(args: string[]): Promise<GitExecutionResult> {
+  try {
+    const { stdout, stderr } = await execFileAsync("git", args, {
+      encoding: "utf8",
+    });
+    return {
+      exitCode: 0,
+      stdout: stdout.trim(),
+      stderr: stderr.trim(),
+    };
+  } catch (error) {
+    const failure = error as {
+      code?: number | string;
+      stdout?: string;
+      stderr?: string;
+    };
+    if (typeof failure.code === "number") {
+      return {
+        exitCode: failure.code,
+        stdout: String(failure.stdout ?? "").trim(),
+        stderr: String(failure.stderr ?? "").trim(),
+      };
+    }
+    throw new Error(`git ${args.join(" ")} failed: ${toErrorMessage(error)}`);
+  }
+}
+
+async function pathExists(path: string): Promise<boolean> {
+  try {
+    await stat(path);
+    return true;
+  } catch (error) {
+    if ((error as NodeJS.ErrnoException).code === "ENOENT") {
+      return false;
+    }
+    throw error;
+  }
+}
+
+function sanitizeSegment(value: string, fallback: string): string {
+  const normalized = value
+    .trim()
+    .replace(/[^a-zA-Z0-9_-]/g, "-")
+    .replace(/-+/g, "-")
+    .replace(/^-+/, "")
+    .replace(/-+$/, "");
+  return normalized || fallback;
+}
+
+function toGitFailureMessage(result: GitExecutionResult): string {
+  const details = result.stderr || result.stdout || "unknown git error";
+  return `git command failed with exit code ${String(result.exitCode)}: ${details}`;
+}
+
+function toStringLines(value: string): string[] {
+  return value
+    .split("\n")
+    .map((line) => line.trim())
+    .filter((line) => line.length > 0);
+}
+
+function parseGitWorktreeRecords(value: string): GitWorktreeRecord[] {
+  const lines = value.split("\n");
+  const records: GitWorktreeRecord[] = [];
+  let current: GitWorktreeRecord | undefined;
+
+  for (const line of lines) {
+    if (!line.trim()) {
+      if (current) {
+        records.push(current);
+        current = undefined;
+      }
+      continue;
+    }
+    if (line.startsWith("worktree ")) {
+      if (current) {
+        records.push(current);
+      }
+      current = {
+        path: line.slice("worktree ".length).trim(),
+      };
+      continue;
+    }
+    if (line.startsWith("branch ") && current) {
+      current.branchRef = line.slice("branch ".length).trim();
+    }
+  }
+
+  if (current) {
+    records.push(current);
+  }
+
+  return records;
+}
+
+export class FileSystemSessionMetadataStore {
+  private readonly stateRoot: string;
+
+  constructor(input: { stateRoot: string }) {
+    this.stateRoot = resolve(input.stateRoot);
+  }
+
+  getStateRoot(): string {
+    return this.stateRoot;
+  }
+
+  getSessionDirectory(sessionId: string): string {
+    return resolve(this.stateRoot, sessionId);
+  }
+
+  getSessionMetadataPath(sessionId: string): string {
+    return resolve(this.getSessionDirectory(sessionId), SESSION_METADATA_FILE_NAME);
+  }
+
+  getSessionProjectContextPath(sessionId: string): string {
+    return resolve(this.getSessionDirectory(sessionId), "project-context.json");
+  }
+
+  async createSession(input: {
+    projectPath: string;
+    baseWorkspacePath: string;
+    sessionId?: string;
+  }): Promise<SessionMetadata> {
+    const sessionId = input.sessionId?.trim() || randomUUID();
+    const now = new Date().toISOString();
+    const metadata: SessionMetadata = {
+      sessionId,
+      projectPath: assertAbsolutePath(input.projectPath, "projectPath"),
+      baseWorkspacePath: assertAbsolutePath(input.baseWorkspacePath, "baseWorkspacePath"),
+      sessionStatus: "active",
+      createdAt: now,
+      updatedAt: now,
+    };
+
+    const sessionDirectory = this.getSessionDirectory(sessionId);
+    await mkdir(sessionDirectory, { recursive: true });
+    await this.writeSessionMetadata(metadata);
+
+    return metadata;
+  }
+
+  async readSession(sessionId: string): Promise<SessionMetadata | undefined> {
+    const metadataPath = this.getSessionMetadataPath(sessionId);
+
+    try {
+      const content = await readFile(metadataPath, "utf8");
+      return toSessionMetadata(JSON.parse(content) as unknown);
+    } catch (error) {
+      if ((error as NodeJS.ErrnoException).code === "ENOENT") {
+        return undefined;
+      }
+      throw error;
+    }
+  }
+
+  async listSessions(): Promise<SessionMetadata[]> {
+    try {
+      const entries = await readdir(this.stateRoot, { withFileTypes: true });
+      const sessions: SessionMetadata[] = [];
+
+      for (const entry of entries) {
+        if (!entry.isDirectory()) {
+          continue;
+        }
+
+        const metadata = await this.readSession(entry.name);
+        if (metadata) {
+          sessions.push(metadata);
+        }
+      }
+
+      sessions.sort((left, right) => right.createdAt.localeCompare(left.createdAt));
+      return sessions;
+    } catch (error) {
+      if ((error as NodeJS.ErrnoException).code === "ENOENT") {
+        return [];
+      }
+      throw error;
+    }
+  }
+
+  async updateSession(
+    sessionId: string,
+    patch: Partial<Pick<SessionMetadata, "projectPath" | "baseWorkspacePath" | "sessionStatus">>,
+  ): Promise<SessionMetadata> {
+    const current = await this.readSession(sessionId);
+    if (!current) {
+      throw new Error(`Session "${sessionId}" does not exist.`);
+    }
+
+    const next: SessionMetadata = {
+      ...current,
+      ...(patch.projectPath ? { projectPath: assertAbsolutePath(patch.projectPath, "projectPath") } : {}),
+      ...(patch.baseWorkspacePath
+        ? { baseWorkspacePath: assertAbsolutePath(patch.baseWorkspacePath, "baseWorkspacePath") }
+        : {}),
+      ...(patch.sessionStatus ? { sessionStatus: patch.sessionStatus } : {}),
+      updatedAt: new Date().toISOString(),
+    };
+
+    await this.writeSessionMetadata(next);
+    return next;
+  }
+
+  private async writeSessionMetadata(metadata: SessionMetadata): Promise<void> {
+    const metadataPath = this.getSessionMetadataPath(metadata.sessionId);
+    await mkdir(dirname(metadataPath), { recursive: true });
+    await withFileLock(`${metadataPath}.lock`, async () => {
+      await writeUtf8FileAtomic(metadataPath, `${JSON.stringify(metadata, null, 2)}\n`);
+    });
+  }
+}
+
+export class SessionWorktreeManager {
+  private readonly worktreeRoot: string;
+  private readonly baseRef: string;
+
+  constructor(input: {
+    worktreeRoot: string;
+    baseRef: string;
+  }) {
+    this.worktreeRoot = assertAbsolutePath(input.worktreeRoot, "worktreeRoot");
+    this.baseRef = assertNonEmptyString(input.baseRef, "baseRef");
+  }
+
+  resolveBaseWorkspacePath(sessionId: string): string {
+    const scoped = sanitizeSegment(sessionId, "session");
+    return resolve(this.worktreeRoot, scoped, "base");
+  }
+
+  resolveTaskWorktreePath(sessionId: string, taskId: string): string {
+    const scopedSession = sanitizeSegment(sessionId, "session");
+    const scopedTask = sanitizeSegment(taskId, "task");
+    return resolve(this.worktreeRoot, scopedSession, "tasks", scopedTask);
+  }
+
+  private resolveBaseBranchName(sessionId: string): string {
+    const scoped = sanitizeSegment(sessionId, "session");
+    return `ai-ops/${scoped}/base`;
+  }
+
+  private resolveTaskBranchName(sessionId: string, taskId: string): string {
+    const scopedSession = sanitizeSegment(sessionId, "session");
+    const scopedTask = sanitizeSegment(taskId, "task");
+    return `ai-ops/${scopedSession}/task/${scopedTask}`;
+  }
+
+  async initializeSessionBaseWorkspace(input: {
+    sessionId: string;
+    projectPath: string;
+    baseWorkspacePath: string;
+  }): Promise<void> {
+    const projectPath = assertAbsolutePath(input.projectPath, "projectPath");
+    const baseWorkspacePath = assertAbsolutePath(input.baseWorkspacePath, "baseWorkspacePath");
+
+    await mkdir(dirname(baseWorkspacePath), { recursive: true });
+
+    const alreadyExists = await pathExists(baseWorkspacePath);
+    if (alreadyExists) {
+      return;
+    }
+
+    const repoRoot = await runGit(["-C", projectPath, "rev-parse", "--show-toplevel"]);
+    const branchName = this.resolveBaseBranchName(input.sessionId);
+    await runGit(["-C", repoRoot, "worktree", "add", "-B", branchName, baseWorkspacePath, this.baseRef]);
+  }
+
+  async ensureTaskWorktree(input: {
+    sessionId: string;
+    taskId: string;
+    baseWorkspacePath: string;
+    existingWorktreePath?: string;
+  }): Promise<{
+    taskWorktreePath: string;
+  }> {
+    const baseWorkspacePath = assertAbsolutePath(input.baseWorkspacePath, "baseWorkspacePath");
+    const maybeExisting = input.existingWorktreePath?.trim();
+    const worktreePath = maybeExisting
+      ? assertAbsolutePath(maybeExisting, "existingWorktreePath")
+      : this.resolveTaskWorktreePath(input.sessionId, input.taskId);
+    const branchName = this.resolveTaskBranchName(input.sessionId, input.taskId);
+    const attachedWorktree = await this.findWorktreePathForBranch(baseWorkspacePath, branchName);
+
+    if (attachedWorktree && attachedWorktree !== worktreePath) {
+      throw new Error(
+        `Task branch "${branchName}" is already attached to worktree "${attachedWorktree}", ` +
+          `expected "${worktreePath}".`,
+      );
+    }
+
+    if (!(await pathExists(worktreePath))) {
+      await runGit(["-C", baseWorkspacePath, "worktree", "prune", "--expire", "now"]);
+    }
+
+    if (!(await pathExists(worktreePath))) {
+      await mkdir(dirname(worktreePath), { recursive: true });
+      const addResult = await runGitWithResult([
+        "-C",
+        baseWorkspacePath,
+        "worktree",
+        "add",
+        "-B",
+        branchName,
+        worktreePath,
+        "HEAD",
+      ]);
+      if (addResult.exitCode !== 0) {
+        const attachedAfterFailure = await this.findWorktreePathForBranch(baseWorkspacePath, branchName);
+        if (attachedAfterFailure === worktreePath && (await pathExists(worktreePath))) {
+          return {
+            taskWorktreePath: worktreePath,
+          };
+        }
+        throw new Error(
+          `git -C ${baseWorkspacePath} worktree add -B ${branchName} ${worktreePath} HEAD failed: ` +
+            `${toGitFailureMessage(addResult)}`,
+        );
+      }
+    }
+
+    return {
+      taskWorktreePath: worktreePath,
+    };
+  }
+
+  async mergeTaskIntoBase(input: {
+    taskId: string;
+    baseWorkspacePath: string;
+    taskWorktreePath: string;
+  }): Promise<MergeTaskIntoBaseOutcome> {
+    const baseWorkspacePath = assertAbsolutePath(input.baseWorkspacePath, "baseWorkspacePath");
+    const taskWorktreePath = assertAbsolutePath(input.taskWorktreePath, "taskWorktreePath");
+    const taskId = input.taskId;
+
+    if (!(await pathExists(baseWorkspacePath))) {
+      throw new Error(`Base workspace "${baseWorkspacePath}" does not exist.`);
+    }
+    if (!(await pathExists(taskWorktreePath))) {
+      throw new Error(`Task worktree "${taskWorktreePath}" does not exist.`);
+    }
+
+    let mergeBase: string | undefined;
+    try {
+      await runGit(["-C", taskWorktreePath, "add", "-A"]);
+      const hasPending = await this.hasStagedChanges(taskWorktreePath);
+      if (hasPending) {
+        await runGit(["-C", taskWorktreePath, "commit", "-m", `ai_ops: finalize task ${taskId}`]);
+      }
+
+      const branchName = await runGit(["-C", taskWorktreePath, "rev-parse", "--abbrev-ref", "HEAD"]);
+      const baseBranch = await runGit(["-C", baseWorkspacePath, "rev-parse", "--abbrev-ref", "HEAD"]);
+      mergeBase = await this.tryReadMergeBase(baseWorkspacePath, baseBranch, branchName);
+
+      if (await this.hasOngoingMerge(taskWorktreePath)) {
+        return {
+          kind: "conflict",
+          taskId,
+          worktreePath: taskWorktreePath,
+          baseWorkspacePath,
+          conflictFiles: await this.readConflictFiles(taskWorktreePath),
+          ...(mergeBase ? { mergeBase } : {}),
+        };
+      }
+
+      const syncTaskBranch = await runGitWithResult([
+        "-C",
+        taskWorktreePath,
+        "merge",
+        "--no-ff",
+        "--no-edit",
+        baseBranch,
+      ]);
+
+      if (syncTaskBranch.exitCode === 1) {
+        return {
+          kind: "conflict",
+          taskId,
+          worktreePath: taskWorktreePath,
+          baseWorkspacePath,
+          conflictFiles: await this.readConflictFiles(taskWorktreePath),
+          ...(mergeBase ? { mergeBase } : {}),
+        };
+      }
+      if (syncTaskBranch.exitCode !== 0) {
+        return {
+          kind: "fatal_error",
+          taskId,
+          worktreePath: taskWorktreePath,
+          baseWorkspacePath,
+          error: toGitFailureMessage(syncTaskBranch),
+          ...(mergeBase ? { mergeBase } : {}),
+        };
+      }
+
+      if (await this.hasOngoingMerge(baseWorkspacePath)) {
+        return {
+          kind: "conflict",
+          taskId,
+          worktreePath: baseWorkspacePath,
+          baseWorkspacePath,
+          conflictFiles: await this.readConflictFiles(baseWorkspacePath),
+          ...(mergeBase ? { mergeBase } : {}),
+        };
+      }
+
+      const mergeIntoBase = await runGitWithResult([
+        "-C",
+        baseWorkspacePath,
+        "merge",
+        "--no-ff",
+        "--no-edit",
+        branchName,
+      ]);
+
+      if (mergeIntoBase.exitCode === 1) {
+        return {
+          kind: "conflict",
+          taskId,
+          worktreePath: baseWorkspacePath,
+          baseWorkspacePath,
+          conflictFiles: await this.readConflictFiles(baseWorkspacePath),
+          ...(mergeBase ? { mergeBase } : {}),
+        };
+      }
+      if (mergeIntoBase.exitCode !== 0) {
+        return {
+          kind: "fatal_error",
+          taskId,
+          worktreePath: taskWorktreePath,
+          baseWorkspacePath,
+          error: toGitFailureMessage(mergeIntoBase),
+          ...(mergeBase ? { mergeBase } : {}),
+        };
+      }
+
+      await this.removeWorktree({
+        repoPath: baseWorkspacePath,
+        worktreePath: taskWorktreePath,
+      });
+
+      return {
+        kind: "success",
+        taskId,
+        worktreePath: taskWorktreePath,
+        baseWorkspacePath,
+      };
+    } catch (error) {
+      return {
+        kind: "fatal_error",
+        taskId,
+        worktreePath: taskWorktreePath,
+        baseWorkspacePath,
+        error: toErrorMessage(error),
+        ...(mergeBase ? { mergeBase } : {}),
+      };
+    }
+  }
+
+  async closeSession(input: {
+    session: SessionMetadata;
+    taskWorktreePaths: string[];
+    mergeBaseIntoProject?: boolean;
+  }): Promise<CloseSessionOutcome> {
+    const projectPath = assertAbsolutePath(input.session.projectPath, "projectPath");
+    const baseWorkspacePath = assertAbsolutePath(input.session.baseWorkspacePath, "baseWorkspacePath");
+    if (!(await pathExists(projectPath))) {
+      throw new Error(`Project path "${projectPath}" does not exist.`);
+    }
+    if (!(await pathExists(baseWorkspacePath))) {
+      throw new Error(`Base workspace "${baseWorkspacePath}" does not exist.`);
+    }
+
+    let baseBranch: string | undefined;
+    let mergeBase: string | undefined;
+
+    try {
+      for (const taskWorktreePath of input.taskWorktreePaths) {
+        if (!taskWorktreePath.trim()) {
+          continue;
+        }
+
+        await this.removeWorktree({
+          repoPath: baseWorkspacePath,
+          worktreePath: taskWorktreePath,
+        });
+      }
+
+      if (input.mergeBaseIntoProject) {
+        baseBranch = await runGit(["-C", baseWorkspacePath, "rev-parse", "--abbrev-ref", "HEAD"]);
+        mergeBase = await this.tryReadMergeBase(projectPath, "HEAD", baseBranch);
+
+        if (await this.hasOngoingMerge(projectPath)) {
+          return {
+            kind: "conflict",
+            sessionId: input.session.sessionId,
+            worktreePath: projectPath,
+            conflictFiles: await this.readConflictFiles(projectPath),
+            ...(baseBranch ? { baseBranch } : {}),
+            ...(mergeBase ? { mergeBase } : {}),
+          };
+        }
+
+        const mergeResult = await runGitWithResult([
+          "-C",
+          projectPath,
+          "merge",
+          "--no-ff",
+          "--no-edit",
+          baseBranch,
+        ]);
+        if (mergeResult.exitCode === 1) {
+          return {
+            kind: "conflict",
+            sessionId: input.session.sessionId,
+            worktreePath: projectPath,
+            conflictFiles: await this.readConflictFiles(projectPath),
+            ...(baseBranch ? { baseBranch } : {}),
+            ...(mergeBase ? { mergeBase } : {}),
+          };
+        }
+        if (mergeResult.exitCode !== 0) {
+          return {
+            kind: "fatal_error",
+            sessionId: input.session.sessionId,
+            error: toGitFailureMessage(mergeResult),
+            ...(baseBranch ? { baseBranch } : {}),
+            ...(mergeBase ? { mergeBase } : {}),
+          };
+        }
+      }
+
+      await this.removeWorktree({
+        repoPath: projectPath,
+        worktreePath: baseWorkspacePath,
+      });
+
+      return {
+        kind: "success",
+        sessionId: input.session.sessionId,
+        mergedToProject: input.mergeBaseIntoProject === true,
+      };
+    } catch (error) {
+      return {
+        kind: "fatal_error",
+        sessionId: input.session.sessionId,
+        error: toErrorMessage(error),
+        ...(baseBranch ? { baseBranch } : {}),
+        ...(mergeBase ? { mergeBase } : {}),
+      };
+    }
+  }
+
+  private async removeWorktree(input: {
+    repoPath: string;
+    worktreePath: string;
+  }): Promise<void> {
+    if (!(await pathExists(input.worktreePath))) {
+      return;
+    }
+
+    await runGit(["-C", input.repoPath, "worktree", "remove", "--force", input.worktreePath]);
+    await runGit(["-C", input.repoPath, "worktree", "prune"]);
+  }
+
+  private async hasStagedChanges(worktreePath: string): Promise<boolean> {
+    try {
+      await execFileAsync("git", ["-C", worktreePath, "diff", "--cached", "--quiet"], {
+        encoding: "utf8",
+      });
+      return false;
+    } catch (error) {
+      const exitCode = (error as { code?: number }).code;
+      if (exitCode === 1) {
+        return true;
+      }
+      throw new Error(`Unable to inspect staged changes: ${toErrorMessage(error)}`);
+    }
+  }
+
+  private async hasOngoingMerge(worktreePath: string): Promise<boolean> {
+    const result = await runGitWithResult([
+      "-C",
+      worktreePath,
+      "rev-parse",
+      "-q",
+      "--verify",
+      "MERGE_HEAD",
+    ]);
+    return result.exitCode === 0;
+  }
+
+  private async readConflictFiles(worktreePath: string): Promise<string[]> {
+    const result = await runGitWithResult([
+      "-C",
+      worktreePath,
+      "diff",
+      "--name-only",
+      "--diff-filter=U",
+    ]);
+    if (result.exitCode !== 0) {
+      return [];
+    }
+    return toStringLines(result.stdout);
+  }
+
+  private async tryReadMergeBase(
+    repoPath: string,
+    leftRef: string,
+    rightRef: string,
+  ): Promise<string | undefined> {
+    const result = await runGitWithResult(["-C", repoPath, "merge-base", leftRef, rightRef]);
+    if (result.exitCode !== 0) {
+      return undefined;
+    }
+    const mergeBase = result.stdout.trim();
+    return mergeBase || undefined;
+  }
+
+  private async findWorktreePathForBranch(
+    repoPath: string,
+    branchName: string,
+  ): Promise<string | undefined> {
+    const branchRef = `refs/heads/${branchName}`;
+    const records = await this.listWorktreeRecords(repoPath);
+    const matched = records.find((record) => record.branchRef === branchRef);
+    if (!matched) {
+      return undefined;
+    }
+    return resolve(matched.path);
+  }
+
+  private async listWorktreeRecords(repoPath: string): Promise<GitWorktreeRecord[]> {
+    const result = await runGitWithResult(["-C", repoPath, "worktree", "list", "--porcelain"]);
+    if (result.exitCode !== 0) {
+      return [];
+    }
+    return parseGitWorktreeRecords(result.stdout);
+  }
+}

src/config.ts

@@ -16,9 +16,21 @@ export type ProviderRuntimeConfig = {
   anthropicApiKey?: string;
   claudeModel?: string;
   claudeCodePath?: string;
+  claudeObservability: ClaudeObservabilityRuntimeConfig;
 };
 
 export type OpenAiAuthMode = "auto" | "chatgpt" | "api_key";
+export type ClaudeObservabilityMode = "off" | "stdout" | "file" | "both";
+export type ClaudeObservabilityVerbosity = "summary" | "full";
+
+export type ClaudeObservabilityRuntimeConfig = {
+  mode: ClaudeObservabilityMode;
+  verbosity: ClaudeObservabilityVerbosity;
+  logPath: string;
+  includePartialMessages: boolean;
+  debug: boolean;
+  debugLogPath?: string;
+};
 
 export type McpRuntimeConfig = {
   configPath: string;
@@ -30,6 +42,7 @@ export type OrchestrationRuntimeConfig = {
   maxDepth: number;
   maxRetries: number;
   maxChildren: number;
+  mergeConflictMaxAttempts: number;
 };
 
 export type DiscoveryRuntimeConfig = {
@@ -77,6 +90,7 @@ const DEFAULT_ORCHESTRATION: OrchestrationRuntimeConfig = {
   maxDepth: 4,
   maxRetries: 2,
   maxChildren: 4,
+  mergeConflictMaxAttempts: 2,
 };
 
 const DEFAULT_PROVISIONING: BuiltInProvisioningConfig = {
@@ -113,6 +127,15 @@ const DEFAULT_RUNTIME_EVENTS: RuntimeEventRuntimeConfig = {
   discordAlwaysNotifyTypes: ["session.started", "session.completed", "session.failed"],
 };
 
+const DEFAULT_CLAUDE_OBSERVABILITY: ClaudeObservabilityRuntimeConfig = {
+  mode: "off",
+  verbosity: "summary",
+  logPath: ".ai_ops/events/claude-trace.ndjson",
+  includePartialMessages: false,
+  debug: false,
+  debugLogPath: undefined,
+};
+
 function readOptionalString(
   env: NodeJS.ProcessEnv,
   key: string,
@@ -272,6 +295,26 @@ function parseOpenAiAuthMode(raw: string): OpenAiAuthMode {
   );
 }
 
+function parseClaudeObservabilityMode(raw: string): ClaudeObservabilityMode {
+  if (raw === "off" || raw === "stdout" || raw === "file" || raw === "both") {
+    return raw;
+  }
+
+  throw new Error(
+    'Environment variable CLAUDE_OBSERVABILITY_MODE must be one of: "off", "stdout", "file", "both".',
+  );
+}
+
+function parseClaudeObservabilityVerbosity(raw: string): ClaudeObservabilityVerbosity {
+  if (raw === "summary" || raw === "full") {
+    return raw;
+  }
+
+  throw new Error(
+    'Environment variable CLAUDE_OBSERVABILITY_VERBOSITY must be one of: "summary", "full".',
+  );
+}
+
 function deepFreeze<T>(value: T): Readonly<T> {
   if (value === null || typeof value !== "object") {
     return value;
@@ -358,6 +401,38 @@ export function loadConfig(env: NodeJS.ProcessEnv = process.env): Readonly<AppCo
       anthropicApiKey,
       claudeModel: normalizeClaudeModel(readOptionalString(env, "CLAUDE_MODEL")),
       claudeCodePath: readOptionalString(env, "CLAUDE_CODE_PATH"),
+      claudeObservability: {
+        mode: parseClaudeObservabilityMode(
+          readStringWithFallback(
+            env,
+            "CLAUDE_OBSERVABILITY_MODE",
+            DEFAULT_CLAUDE_OBSERVABILITY.mode,
+          ),
+        ),
+        verbosity: parseClaudeObservabilityVerbosity(
+          readStringWithFallback(
+            env,
+            "CLAUDE_OBSERVABILITY_VERBOSITY",
+            DEFAULT_CLAUDE_OBSERVABILITY.verbosity,
+          ),
+        ),
+        logPath: readStringWithFallback(
+          env,
+          "CLAUDE_OBSERVABILITY_LOG_PATH",
+          DEFAULT_CLAUDE_OBSERVABILITY.logPath,
+        ),
+        includePartialMessages: readBooleanWithFallback(
+          env,
+          "CLAUDE_OBSERVABILITY_INCLUDE_PARTIAL",
+          DEFAULT_CLAUDE_OBSERVABILITY.includePartialMessages,
+        ),
+        debug: readBooleanWithFallback(
+          env,
+          "CLAUDE_OBSERVABILITY_DEBUG",
+          DEFAULT_CLAUDE_OBSERVABILITY.debug,
+        ),
+        debugLogPath: readOptionalString(env, "CLAUDE_OBSERVABILITY_DEBUG_LOG_PATH"),
+      },
     },
     mcp: {
       configPath: readStringWithFallback(env, "MCP_CONFIG_PATH", "./mcp.config.json"),
@@ -411,6 +486,12 @@ export function loadConfig(env: NodeJS.ProcessEnv = process.env): Readonly<AppCo
         DEFAULT_ORCHESTRATION.maxChildren,
         { min: 1 },
       ),
+      mergeConflictMaxAttempts: readIntegerWithBounds(
+        env,
+        "AGENT_MERGE_CONFLICT_MAX_ATTEMPTS",
+        DEFAULT_ORCHESTRATION.mergeConflictMaxAttempts,
+        { min: 1 },
+      ),
     },
     provisioning: {
       gitWorktree: {

src/examples/claude.ts

@@ -85,6 +85,7 @@ export async function runClaudePrompt(
   const writeOutput = dependencies.writeOutput ?? ((output: string) => console.log(output));
   const sessionContext = await createSessionContextFn("claude", {
     prompt,
+    workspaceRoot: process.cwd(),
     config,
   });
 

src/examples/codex.ts

@@ -48,6 +48,7 @@ export async function runCodexPrompt(
   const writeOutput = dependencies.writeOutput ?? ((output: string) => console.log(output));
   const sessionContext = await createSessionContextFn("codex", {
     prompt,
+    workspaceRoot: process.cwd(),
     config,
   });
 

src/examples/session-context.ts

@@ -28,6 +28,7 @@ export async function createSessionContext(
   provider: SessionProvider,
   input: {
     prompt: string;
+    workspaceRoot: string;
     config?: Readonly<AppConfig>;
     mcpRegistry?: McpRegistry;
   },
@@ -58,6 +59,7 @@ export async function createSessionContext(
     provisionedResources = await resourceProvisioning.provisionSession({
       sessionId: agentSession.id,
       resources: [{ kind: "git-worktree" }, { kind: "port-range" }],
+      workspaceRoot: input.workspaceRoot,
     });
 
     const providerAuthEnv =
@@ -82,6 +84,7 @@ export async function createSessionContext(
       {
         providerHint: provider,
         prompt: input.prompt,
+        workingDirectory: runtimeInjection.workingDirectory,
       },
       {
         config,

src/mcp.ts

@@ -1,5 +1,5 @@
 import { existsSync, readFileSync } from "node:fs";
-import { resolve } from "node:path";
+import { isAbsolute, resolve } from "node:path";
 import type { CodexOptions } from "@openai/codex-sdk";
 import { getConfig, type AppConfig } from "./config.js";
 import { normalizeSharedMcpConfigFile } from "./mcp/converters.js";
@@ -23,12 +23,17 @@ import type {
 import { parseMcpConfig } from "./mcp/types.js";
 import type { ToolClearancePolicy } from "./security/schemas.js";
 
-function readConfigFile(configPath: string): {
+function readConfigFile(input: {
+  configPath: string;
+  workingDirectory?: string;
+}): {
   config?: SharedMcpConfigFile;
   sourcePath?: string;
 } {
-  const candidatePath = configPath.trim() || "./mcp.config.json";
+  const candidatePath = input.configPath.trim() || "./mcp.config.json";
-  const resolvedPath = resolve(process.cwd(), candidatePath);
+  const resolvedPath = isAbsolute(candidatePath)
+    ? candidatePath
+    : resolve(input.workingDirectory ?? process.cwd(), candidatePath);
 
   if (!existsSync(resolvedPath)) {
     if (candidatePath !== "./mcp.config.json") {
@@ -83,7 +88,10 @@ export function loadMcpConfigFromEnv(
   const registry = options?.registry ?? defaultMcpRegistry;
   const warn = options?.warn ?? ((message: string) => console.warn(message));
 
-  const { config, sourcePath } = readConfigFile(runtimeConfig.mcp.configPath);
+  const { config, sourcePath } = readConfigFile({
+    configPath: runtimeConfig.mcp.configPath,
+    workingDirectory: context.workingDirectory,
+  });
   if (!config) {
     return {};
   }

src/mcp/types.ts

@@ -50,6 +50,7 @@ export type SharedMcpConfigFile = {
 export type McpLoadContext = {
   providerHint?: "codex" | "claude" | "both";
   prompt?: string;
+  workingDirectory?: string;
 };
 
 export type LoadedMcpConfig = {

src/security/rules-engine.ts

@@ -13,41 +13,43 @@ import {
 } from "./schemas.js";
 
 export type SecurityAuditEvent =
-  | {
+  | ({
       type: "shell.command_profiled";
-      timestamp: string;
       command: string;
       cwd: string;
       parsed: ParsedShellScript;
-    }
+    } & SecurityAuditContext)
-  | {
+  | ({
       type: "shell.command_allowed";
-      timestamp: string;
       command: string;
       cwd: string;
       commandCount: number;
-    }
+    } & SecurityAuditContext)
-  | {
+  | ({
       type: "shell.command_blocked";
-      timestamp: string;
       command: string;
       cwd: string;
       reason: string;
       code: string;
       details?: Record<string, unknown>;
-    }
+    } & SecurityAuditContext)
-  | {
+  | ({
       type: "tool.invocation_allowed";
-      timestamp: string;
       tool: string;
-    }
+    } & SecurityAuditContext)
-  | {
+  | ({
       type: "tool.invocation_blocked";
-      timestamp: string;
       tool: string;
       reason: string;
       code: string;
-    };
+    } & SecurityAuditContext);
+
+export type SecurityAuditContext = {
+  timestamp: string;
+  sessionId?: string;
+  nodeId?: string;
+  attempt?: number;
+};
 
 export type SecurityAuditSink = (event: SecurityAuditEvent) => void;
 
@@ -102,6 +104,28 @@ function toNow(): string {
   return new Date().toISOString();
 }
 
+function toAuditContext(input?: {
+  sessionId?: string;
+  nodeId?: string;
+  attempt?: number;
+}): SecurityAuditContext {
+  const output: SecurityAuditContext = {
+    timestamp: toNow(),
+  };
+
+  if (input?.sessionId) {
+    output.sessionId = input.sessionId;
+  }
+  if (input?.nodeId) {
+    output.nodeId = input.nodeId;
+  }
+  if (typeof input?.attempt === "number" && Number.isInteger(input.attempt) && input.attempt >= 1) {
+    output.attempt = input.attempt;
+  }
+
+  return output;
+}
+
 export class SecurityRulesEngine {
   private readonly policy: ShellValidationPolicy;
   private readonly allowedBinaries: Set<string>;
@@ -136,6 +160,11 @@ export class SecurityRulesEngine {
     command: string;
     cwd: string;
     toolClearance?: ToolClearancePolicy;
+    context?: {
+      sessionId?: string;
+      nodeId?: string;
+      attempt?: number;
+    };
   }): Promise<ValidatedShellCommand> {
     const resolvedCwd = resolve(input.cwd);
 
@@ -147,22 +176,22 @@ export class SecurityRulesEngine {
         : undefined;
 
       this.emit({
+        ...toAuditContext(input.context),
         type: "shell.command_profiled",
-        timestamp: toNow(),
         command: input.command,
         cwd: resolvedCwd,
         parsed,
       });
 
       for (const command of parsed.commands) {
-        this.assertBinaryAllowed(command, toolClearance);
+        this.assertBinaryAllowed(command, toolClearance, input.context);
         this.assertAssignmentsAllowed(command);
         this.assertArgumentPaths(command, resolvedCwd);
       }
 
       this.emit({
+        ...toAuditContext(input.context),
         type: "shell.command_allowed",
-        timestamp: toNow(),
         command: input.command,
         cwd: resolvedCwd,
         commandCount: parsed.commandCount,
@@ -175,8 +204,8 @@ export class SecurityRulesEngine {
     } catch (error) {
       if (error instanceof SecurityViolationError) {
         this.emit({
+          ...toAuditContext(input.context),
           type: "shell.command_blocked",
-          timestamp: toNow(),
           command: input.command,
           cwd: resolvedCwd,
           reason: error.message,
@@ -196,13 +225,18 @@ export class SecurityRulesEngine {
   assertToolInvocationAllowed(input: {
     tool: string;
     toolClearance: ToolClearancePolicy;
+    context?: {
+      sessionId?: string;
+      nodeId?: string;
+      attempt?: number;
+    };
   }): void {
     const policy = parseToolClearancePolicy(input.toolClearance);
 
     if (policy.banlist.includes(input.tool)) {
       this.emit({
+        ...toAuditContext(input.context),
         type: "tool.invocation_blocked",
-        timestamp: toNow(),
         tool: input.tool,
         reason: `Tool "${input.tool}" is explicitly banned by policy.`,
         code: "TOOL_BANNED",
@@ -220,8 +254,8 @@ export class SecurityRulesEngine {
 
     if (policy.allowlist.length > 0 && !policy.allowlist.includes(input.tool)) {
       this.emit({
+        ...toAuditContext(input.context),
         type: "tool.invocation_blocked",
-        timestamp: toNow(),
         tool: input.tool,
         reason: `Tool "${input.tool}" is not present in allowlist.`,
         code: "TOOL_NOT_ALLOWED",
@@ -238,8 +272,8 @@ export class SecurityRulesEngine {
     }
 
     this.emit({
+      ...toAuditContext(input.context),
       type: "tool.invocation_allowed",
-      timestamp: toNow(),
       tool: input.tool,
     });
   }
@@ -290,6 +324,11 @@ export class SecurityRulesEngine {
   private assertBinaryAllowed(
     command: ParsedShellCommand,
     toolClearance?: ToolClearancePolicy,
+    context?: {
+      sessionId?: string;
+      nodeId?: string;
+      attempt?: number;
+    },
   ): void {
     const binaryToken = normalizeToken(command.binary);
     const binaryName = basename(binaryToken);
@@ -313,6 +352,7 @@ export class SecurityRulesEngine {
     this.assertToolInvocationAllowed({
       tool: binaryName,
       toolClearance,
+      context,
     });
   }
 

src/ui/claude-observability.ts

@@ -0,0 +1,821 @@
+import { randomUUID } from "node:crypto";
+import { appendFile, mkdir } from "node:fs/promises";
+import { dirname, resolve } from "node:path";
+import type { Options, SDKMessage } from "@anthropic-ai/claude-agent-sdk";
+import type {
+  ClaudeObservabilityMode,
+  ClaudeObservabilityRuntimeConfig,
+  ClaudeObservabilityVerbosity,
+} from "../config.js";
+import type { JsonObject, JsonValue } from "../agents/types.js";
+
+const MAX_STRING_LENGTH = 320;
+const MAX_ARRAY_ITEMS = 20;
+const MAX_OBJECT_KEYS = 60;
+const MAX_DEPTH = 6;
+
+const NON_SECRET_TOKEN_KEYS = new Set([
+  "input_tokens",
+  "output_tokens",
+  "total_tokens",
+  "cache_creation_input_tokens",
+  "cache_read_input_tokens",
+  "ephemeral_1h_input_tokens",
+  "ephemeral_5m_input_tokens",
+  "token_input",
+  "token_output",
+  "token_total",
+  "tokencount",
+  "token_count",
+  "tool_use_id",
+  "parent_tool_use_id",
+  "task_id",
+  "session_id",
+]);
+
+type ClaudeTraceContext = {
+  sessionId: string;
+  nodeId: string;
+  attempt: number;
+  depth: number;
+};
+
+type ClaudeTraceRecord = {
+  id: string;
+  timestamp: string;
+  source: "claude_sdk";
+  stage:
+    | "query.started"
+    | "query.message"
+    | "query.stderr"
+    | "query.completed"
+    | "query.error";
+  message: string;
+  sessionId: string;
+  nodeId: string;
+  attempt: number;
+  depth: number;
+  sdkSessionId?: string;
+  sdkMessageType?: string;
+  sdkMessageSubtype?: string;
+  data?: JsonObject;
+};
+
+function truncate(value: string, maxLength = MAX_STRING_LENGTH): string {
+  if (value.length <= maxLength) {
+    return value;
+  }
+  return `${value.slice(0, maxLength)}...`;
+}
+
+function isSensitiveKey(key: string): boolean {
+  const normalized = key.trim().toLowerCase();
+  if (!normalized) {
+    return false;
+  }
+
+  if (NON_SECRET_TOKEN_KEYS.has(normalized)) {
+    return false;
+  }
+
+  if (/(api[_-]?key|secret|password|authorization|cookie)/i.test(key)) {
+    return true;
+  }
+
+  if (/(auth[_-]?token|access[_-]?token|refresh[_-]?token|id[_-]?token|oauth)/i.test(key)) {
+    return true;
+  }
+
+  return normalized === "token";
+}
+
+function toJsonPrimitive(value: unknown): JsonValue {
+  if (value === null) {
+    return null;
+  }
+  if (typeof value === "string") {
+    return truncate(value);
+  }
+  if (typeof value === "number") {
+    return Number.isFinite(value) ? value : String(value);
+  }
+  if (typeof value === "boolean") {
+    return value;
+  }
+  if (typeof value === "bigint") {
+    return String(value);
+  }
+  if (typeof value === "undefined") {
+    return null;
+  }
+  return truncate(String(value));
+}
+
+function sanitizeJsonValue(value: unknown, depth = 0): JsonValue {
+  if (depth >= MAX_DEPTH) {
+    return "[depth_limit]";
+  }
+
+  if (
+    value === null ||
+    typeof value === "string" ||
+    typeof value === "number" ||
+    typeof value === "boolean" ||
+    typeof value === "bigint" ||
+    typeof value === "undefined"
+  ) {
+    return toJsonPrimitive(value);
+  }
+
+  if (Array.isArray(value)) {
+    const output = value.slice(0, MAX_ARRAY_ITEMS).map((entry) => sanitizeJsonValue(entry, depth + 1));
+    if (value.length > MAX_ARRAY_ITEMS) {
+      output.push(`[+${String(value.length - MAX_ARRAY_ITEMS)} more]`);
+    }
+    return output;
+  }
+
+  if (typeof value === "object") {
+    const output: JsonObject = {};
+    const entries = Object.entries(value as Record<string, unknown>);
+    const limited = entries.slice(0, MAX_OBJECT_KEYS);
+    for (const [key, entryValue] of limited) {
+      if (isSensitiveKey(key)) {
+        output[key] = "[redacted]";
+        continue;
+      }
+      output[key] = sanitizeJsonValue(entryValue, depth + 1);
+    }
+    if (entries.length > MAX_OBJECT_KEYS) {
+      output.__truncated_keys = entries.length - MAX_OBJECT_KEYS;
+    }
+    return output;
+  }
+
+  return truncate(String(value));
+}
+
+function readString(value: unknown): string | undefined {
+  if (typeof value !== "string") {
+    return undefined;
+  }
+  const trimmed = value.trim();
+  return trimmed.length > 0 ? trimmed : undefined;
+}
+
+function readNumber(value: unknown): number | undefined {
+  return typeof value === "number" && Number.isFinite(value) ? value : undefined;
+}
+
+function readBoolean(value: unknown): boolean | undefined {
+  return typeof value === "boolean" ? value : undefined;
+}
+
+function toMessageRecord(message: SDKMessage): Record<string, unknown> {
+  return message as unknown as Record<string, unknown>;
+}
+
+function toMessageSubtype(message: SDKMessage): string | undefined {
+  return readString(toMessageRecord(message).subtype);
+}
+
+function toMessageSessionId(message: SDKMessage): string | undefined {
+  return readString(toMessageRecord(message).session_id);
+}
+
+function toTaskNotificationSummary(message: SDKMessage): {
+  summary: string;
+  data?: JsonObject;
+} {
+  const raw = toMessageRecord(message);
+  const status = readString(raw.status) ?? "unknown";
+  const data: JsonObject = {
+    status,
+  };
+
+  const taskId = readString(raw.task_id);
+  if (taskId) {
+    data.taskId = taskId;
+  }
+
+  const summaryText = readString(raw.summary);
+  if (summaryText) {
+    data.summary = truncate(summaryText);
+  }
+
+  const outputFile = readString(raw.output_file);
+  if (outputFile) {
+    data.outputFile = outputFile;
+  }
+
+  if (raw.usage !== undefined) {
+    data.usage = sanitizeJsonValue(raw.usage);
+  }
+
+  return {
+    summary: `Task notification: ${status}.`,
+    data,
+  };
+}
+
+function toTaskStartedSummary(message: SDKMessage): {
+  summary: string;
+  data?: JsonObject;
+} {
+  const raw = toMessageRecord(message);
+  const data: JsonObject = {};
+
+  const taskId = readString(raw.task_id);
+  if (taskId) {
+    data.taskId = taskId;
+  }
+
+  const description = readString(raw.description);
+  if (description) {
+    data.description = truncate(description);
+  }
+
+  const taskType = readString(raw.task_type);
+  if (taskType) {
+    data.taskType = taskType;
+  }
+
+  const toolUseId = readString(raw.tool_use_id);
+  if (toolUseId) {
+    data.toolUseId = toolUseId;
+  }
+
+  return {
+    summary: "Task started.",
+    ...(Object.keys(data).length > 0 ? { data } : {}),
+  };
+}
+
+function toMessageSummary(message: SDKMessage): {
+  summary: string;
+  data?: JsonObject;
+} {
+  const subtype = toMessageSubtype(message);
+  const raw = toMessageRecord(message);
+
+  if (message.type === "result") {
+    if (message.subtype === "success") {
+      return {
+        summary: "Claude query result success.",
+        data: {
+          stopReason: message.stop_reason ?? null,
+          numTurns: message.num_turns,
+          usage: sanitizeJsonValue(message.usage) as JsonObject,
+          totalCostUsd: message.total_cost_usd,
+        },
+      };
+    }
+
+    return {
+      summary: `Claude query result ${message.subtype}.`,
+      data: {
+        stopReason: message.stop_reason ?? null,
+        numTurns: message.num_turns,
+        usage: sanitizeJsonValue(message.usage) as JsonObject,
+        totalCostUsd: message.total_cost_usd,
+        errors: sanitizeJsonValue(message.errors),
+      },
+    };
+  }
+
+  if (message.type === "tool_progress") {
+    return {
+      summary: `Tool progress: ${message.tool_name}.`,
+      data: {
+        toolName: message.tool_name,
+        toolUseId: message.tool_use_id,
+        elapsedTimeSeconds: message.elapsed_time_seconds,
+        parentToolUseId: message.parent_tool_use_id ?? null,
+        ...(message.task_id ? { taskId: message.task_id } : {}),
+      },
+    };
+  }
+
+  if (message.type === "tool_use_summary") {
+    return {
+      summary: "Tool use summary emitted.",
+      data: {
+        summary: truncate(message.summary),
+        precedingToolUseIds: sanitizeJsonValue(message.preceding_tool_use_ids),
+      },
+    };
+  }
+
+  if (message.type === "stream_event") {
+    const data: JsonObject = {};
+    const eventType = readString((raw.event as Record<string, unknown> | undefined)?.type);
+    if (eventType) {
+      data.eventType = eventType;
+    }
+    const parentToolUseId = readString(raw.parent_tool_use_id);
+    if (parentToolUseId) {
+      data.parentToolUseId = parentToolUseId;
+    }
+    return {
+      summary: "Partial assistant stream event emitted.",
+      ...(Object.keys(data).length > 0 ? { data } : {}),
+    };
+  }
+
+  if (message.type === "auth_status") {
+    return {
+      summary: message.isAuthenticating ? "Authentication in progress." : "Authentication status update.",
+      data: {
+        isAuthenticating: message.isAuthenticating,
+        output: sanitizeJsonValue(message.output),
+        ...(message.error ? { error: truncate(message.error) } : {}),
+      },
+    };
+  }
+
+  if (message.type === "assistant") {
+    return {
+      summary: "Assistant message emitted.",
+      data: {
+        parentToolUseId: message.parent_tool_use_id ?? null,
+        ...(message.error ? { error: message.error } : {}),
+      },
+    };
+  }
+
+  if (message.type === "user") {
+    const data: JsonObject = {
+      parentToolUseId: (message as { parent_tool_use_id?: string | null }).parent_tool_use_id ?? null,
+    };
+    const isSynthetic = readBoolean(raw.isSynthetic);
+    if (isSynthetic !== undefined) {
+      data.isSynthetic = isSynthetic;
+    }
+    const isReplay = readBoolean(raw.isReplay);
+    if (isReplay !== undefined) {
+      data.isReplay = isReplay;
+    }
+    return {
+      summary: "User message emitted.",
+      data,
+    };
+  }
+
+  if (subtype === "task_notification") {
+    return toTaskNotificationSummary(message);
+  }
+
+  if (subtype === "task_started") {
+    return toTaskStartedSummary(message);
+  }
+
+  if (message.type === "system" && subtype === "files_persisted") {
+    const files = Array.isArray(raw.files) ? raw.files : [];
+    const failed = Array.isArray(raw.failed) ? raw.failed : [];
+    return {
+      summary: "System event: files_persisted.",
+      data: {
+        persistedFileCount: files.length,
+        failedFileCount: failed.length,
+      },
+    };
+  }
+
+  if (message.type === "system" && subtype === "compact_boundary") {
+    return {
+      summary: "System event: compact_boundary.",
+      data: {
+        compactMetadata: sanitizeJsonValue(raw.compact_metadata),
+      },
+    };
+  }
+
+  if (message.type === "system" && subtype === "status") {
+    const data: JsonObject = {
+      status: readString(raw.status) ?? "none",
+    };
+    const permissionMode = readString(raw.permissionMode);
+    if (permissionMode) {
+      data.permissionMode = permissionMode;
+    }
+    return {
+      summary: "System event: status.",
+      data,
+    };
+  }
+
+  if (message.type === "system" && (subtype === "hook_started" || subtype === "hook_progress" || subtype === "hook_response")) {
+    const data: JsonObject = {
+      ...(subtype ? { subtype } : {}),
+      ...(readString(raw.hook_id) ? { hookId: readString(raw.hook_id) } : {}),
+      ...(readString(raw.hook_name) ? { hookName: readString(raw.hook_name) } : {}),
+      ...(readString(raw.hook_event) ? { hookEvent: readString(raw.hook_event) } : {}),
+      ...(readString(raw.outcome) ? { outcome: readString(raw.outcome) } : {}),
+    };
+    if (raw.exit_code !== undefined) {
+      data.exitCode = sanitizeJsonValue(raw.exit_code);
+    }
+    return {
+      summary: `System event: ${subtype}.`,
+      data,
+    };
+  }
+
+  if (message.type === "system") {
+    return {
+      summary: subtype ? `System event: ${subtype}.` : "System event emitted.",
+      data: subtype ? { subtype } : undefined,
+    };
+  }
+
+  if (message.type === "rate_limit") {
+    return {
+      summary: "Rate limit event emitted.",
+      data: sanitizeJsonValue(raw) as JsonObject,
+    };
+  }
+
+  if (message.type === "prompt_suggestion") {
+    const data: JsonObject = {
+      ...(readString(raw.prompt) ? { prompt: truncate(readString(raw.prompt) as string) } : {}),
+      ...(readString(raw.suggestion) ? { suggestion: truncate(readString(raw.suggestion) as string) } : {}),
+    };
+    return {
+      summary: "Prompt suggestion emitted.",
+      ...(Object.keys(data).length > 0 ? { data } : {}),
+    };
+  }
+
+  return {
+    summary: `Claude SDK message received (${message.type}).`,
+  };
+}
+
+function toRecord(input: {
+  stage: ClaudeTraceRecord["stage"];
+  message: string;
+  context: ClaudeTraceContext;
+  sdkMessageType?: string;
+  sdkMessageSubtype?: string;
+  sdkSessionId?: string;
+  data?: JsonObject;
+}): ClaudeTraceRecord {
+  return {
+    id: randomUUID(),
+    timestamp: new Date().toISOString(),
+    source: "claude_sdk",
+    stage: input.stage,
+    message: input.message,
+    sessionId: input.context.sessionId,
+    nodeId: input.context.nodeId,
+    attempt: input.context.attempt,
+    depth: input.context.depth,
+    ...(input.sdkMessageType ? { sdkMessageType: input.sdkMessageType } : {}),
+    ...(input.sdkMessageSubtype ? { sdkMessageSubtype: input.sdkMessageSubtype } : {}),
+    ...(input.sdkSessionId ? { sdkSessionId: input.sdkSessionId } : {}),
+    ...(input.data ? { data: input.data } : {}),
+  };
+}
+
+export function summarizeClaudeMessage(
+  message: SDKMessage,
+  verbosity: ClaudeObservabilityVerbosity,
+): {
+  messageType: string;
+  messageSubtype?: string;
+  sdkSessionId?: string;
+  summary: string;
+  data?: JsonObject;
+} {
+  const messageSubtype = toMessageSubtype(message);
+  const sdkSessionId = toMessageSessionId(message);
+  const summary = toMessageSummary(message);
+  if (verbosity === "full") {
+    return {
+      messageType: message.type,
+      ...(messageSubtype ? { messageSubtype } : {}),
+      ...(sdkSessionId ? { sdkSessionId } : {}),
+      summary: summary.summary,
+      data: {
+        message: sanitizeJsonValue(message) as JsonObject,
+      },
+    };
+  }
+
+  return {
+    messageType: message.type,
+    ...(messageSubtype ? { messageSubtype } : {}),
+    ...(sdkSessionId ? { sdkSessionId } : {}),
+    summary: summary.summary,
+    ...(summary.data ? { data: summary.data } : {}),
+  };
+}
+
+export class ClaudeObservabilityLogger {
+  private readonly mode: ClaudeObservabilityMode;
+  private readonly verbosity: ClaudeObservabilityVerbosity;
+  private readonly logPath: string;
+  private readonly includePartialMessages: boolean;
+  private readonly debug: boolean;
+  private readonly debugLogPath?: string;
+  private readonly pendingWrites = new Set<Promise<void>>();
+  private readonly stdoutProgressByKey = new Map<string, {
+    lastEmittedAt: number;
+    suppressed: number;
+  }>();
+  private readonly fileProgressByKey = new Map<string, {
+    lastEmittedAt: number;
+    suppressed: number;
+  }>();
+  private readonly stdoutStreamByKey = new Map<string, {
+    lastEmittedAt: number;
+    suppressed: number;
+  }>();
+  private readonly fileStreamByKey = new Map<string, {
+    lastEmittedAt: number;
+    suppressed: number;
+  }>();
+  private fileWriteFailureCount = 0;
+
+  constructor(input: {
+    workspaceRoot: string;
+    config: ClaudeObservabilityRuntimeConfig;
+  }) {
+    this.mode = input.config.mode;
+    this.verbosity = input.config.verbosity;
+    this.logPath = resolve(input.workspaceRoot, input.config.logPath);
+    this.includePartialMessages = input.config.includePartialMessages;
+    this.debug = input.config.debug;
+    this.debugLogPath = input.config.debugLogPath
+      ? resolve(input.workspaceRoot, input.config.debugLogPath)
+      : undefined;
+  }
+
+  isEnabled(): boolean {
+    return this.mode !== "off";
+  }
+
+  toOptionOverrides(input: {
+    context: ClaudeTraceContext;
+  }): Pick<Options, "includePartialMessages" | "debug" | "debugFile" | "stderr"> {
+    return {
+      includePartialMessages: this.includePartialMessages,
+      debug: this.debug || this.debugLogPath !== undefined,
+      ...(this.debugLogPath ? { debugFile: this.debugLogPath } : {}),
+      stderr: (data: string): void => {
+        this.record({
+          stage: "query.stderr",
+          message: "Claude SDK stderr output.",
+          context: input.context,
+          data: {
+            stderr: sanitizeJsonValue(data),
+          },
+        });
+      },
+    };
+  }
+
+  recordQueryStarted(input: {
+    context: ClaudeTraceContext;
+    data?: JsonObject;
+  }): void {
+    this.record({
+      stage: "query.started",
+      message: "Claude query started.",
+      context: input.context,
+      ...(input.data ? { data: input.data } : {}),
+    });
+  }
+
+  recordMessage(input: {
+    context: ClaudeTraceContext;
+    message: SDKMessage;
+  }): void {
+    const summarized = summarizeClaudeMessage(input.message, this.verbosity);
+    this.record({
+      stage: "query.message",
+      message: summarized.summary,
+      context: input.context,
+      sdkMessageType: summarized.messageType,
+      sdkMessageSubtype: summarized.messageSubtype,
+      sdkSessionId: summarized.sdkSessionId,
+      ...(summarized.data ? { data: summarized.data } : {}),
+    });
+  }
+
+  recordQueryCompleted(input: {
+    context: ClaudeTraceContext;
+    data?: JsonObject;
+  }): void {
+    this.record({
+      stage: "query.completed",
+      message: "Claude query completed.",
+      context: input.context,
+      ...(input.data ? { data: input.data } : {}),
+    });
+  }
+
+  recordQueryError(input: {
+    context: ClaudeTraceContext;
+    error: unknown;
+  }): void {
+    const errorMessage = input.error instanceof Error ? input.error.message : String(input.error);
+    this.record({
+      stage: "query.error",
+      message: "Claude query failed.",
+      context: input.context,
+      data: {
+        error: truncate(errorMessage),
+      },
+    });
+  }
+
+  async close(): Promise<void> {
+    await Promise.all([...this.pendingWrites]);
+  }
+
+  private record(input: {
+    stage: ClaudeTraceRecord["stage"];
+    message: string;
+    context: ClaudeTraceContext;
+    sdkMessageType?: string;
+    sdkMessageSubtype?: string;
+    sdkSessionId?: string;
+    data?: JsonObject;
+  }): void {
+    if (!this.isEnabled()) {
+      return;
+    }
+
+    const record = toRecord(input);
+
+    if (this.mode === "stdout" || this.mode === "both") {
+      const stdoutRecord = this.toStdoutRecord(record);
+      if (stdoutRecord) {
+        console.log(`[claude-trace] ${JSON.stringify(stdoutRecord)}`);
+      }
+    }
+
+    if (this.mode === "file" || this.mode === "both") {
+      const fileRecord = this.toFileRecord(record);
+      if (!fileRecord) {
+        return;
+      }
+      const line = JSON.stringify(fileRecord);
+      const write = mkdir(dirname(this.logPath), { recursive: true })
+        .then(() => appendFile(this.logPath, `${line}\n`, "utf8"))
+        .catch((error: unknown) => {
+          this.reportFileWriteFailure(error);
+        })
+        .finally(() => {
+          this.pendingWrites.delete(write);
+        });
+      this.pendingWrites.add(write);
+    }
+  }
+
+  private toStdoutRecord(record: ClaudeTraceRecord): ClaudeTraceRecord | undefined {
+    return this.toFilteredMessageRecord(record, "stdout");
+  }
+
+  private toFileRecord(record: ClaudeTraceRecord): ClaudeTraceRecord | undefined {
+    return this.toFilteredMessageRecord(record, "file");
+  }
+
+  private toFilteredMessageRecord(
+    record: ClaudeTraceRecord,
+    destination: "stdout" | "file",
+  ): ClaudeTraceRecord | undefined {
+    if (record.stage !== "query.message") {
+      return record;
+    }
+
+    if (!record.sdkMessageType) {
+      return record;
+    }
+
+    if (record.sdkMessageType === "tool_progress") {
+      return this.toSampledToolProgressRecord(record, destination);
+    }
+
+    if (record.sdkMessageType === "stream_event") {
+      if (!this.includePartialMessages) {
+        return undefined;
+      }
+      return this.toSampledStreamEventRecord(record, destination);
+    }
+
+    if (record.sdkMessageType === "auth_status") {
+      const data = record.data;
+      const isAuthenticating = data?.isAuthenticating === true;
+      const hasError = typeof data?.error === "string" && data.error.trim().length > 0;
+      if (hasError || !isAuthenticating) {
+        return record;
+      }
+      return undefined;
+    }
+
+    return record;
+  }
+
+  private toSampledToolProgressRecord(
+    record: ClaudeTraceRecord,
+    destination: "stdout" | "file",
+  ): ClaudeTraceRecord | undefined {
+    const now = Date.now();
+    const minIntervalMs = destination === "stdout" ? 1000 : 2000;
+    const rawToolUseId = record.data?.toolUseId;
+    const toolUseId = typeof rawToolUseId === "string" ? rawToolUseId : "unknown";
+    const key = `${destination}:${record.sessionId}:${record.nodeId}:${toolUseId}`;
+    const progressByKey = destination === "stdout" ? this.stdoutProgressByKey : this.fileProgressByKey;
+    const state = progressByKey.get(key);
+
+    if (!state) {
+      progressByKey.set(key, {
+        lastEmittedAt: now,
+        suppressed: 0,
+      });
+      return record;
+    }
+
+    if (now - state.lastEmittedAt < minIntervalMs) {
+      state.suppressed += 1;
+      return undefined;
+    }
+
+    state.lastEmittedAt = now;
+    const suppressed = state.suppressed;
+    state.suppressed = 0;
+
+    if (suppressed < 1) {
+      return record;
+    }
+
+    const nextData: JsonObject = {
+      ...(record.data ?? {}),
+      suppressedSinceLastEmit: suppressed,
+    };
+
+    return {
+      ...record,
+      data: nextData,
+    };
+  }
+
+  private toSampledStreamEventRecord(
+    record: ClaudeTraceRecord,
+    destination: "stdout" | "file",
+  ): ClaudeTraceRecord | undefined {
+    const now = Date.now();
+    const minIntervalMs = destination === "stdout" ? 700 : 1200;
+    const key = `${destination}:${record.sessionId}:${record.nodeId}:stream`;
+    const streamByKey = destination === "stdout" ? this.stdoutStreamByKey : this.fileStreamByKey;
+    const state = streamByKey.get(key);
+
+    if (!state) {
+      streamByKey.set(key, {
+        lastEmittedAt: now,
+        suppressed: 0,
+      });
+      return record;
+    }
+
+    if (now - state.lastEmittedAt < minIntervalMs) {
+      state.suppressed += 1;
+      return undefined;
+    }
+
+    state.lastEmittedAt = now;
+    const suppressed = state.suppressed;
+    state.suppressed = 0;
+
+    if (suppressed < 1) {
+      return record;
+    }
+
+    const nextData: JsonObject = {
+      ...(record.data ?? {}),
+      suppressedStreamEventsSinceLastEmit: suppressed,
+    };
+
+    return {
+      ...record,
+      data: nextData,
+    };
+  }
+
+  private reportFileWriteFailure(error: unknown): void {
+    this.fileWriteFailureCount += 1;
+    if (this.fileWriteFailureCount <= 5) {
+      const message = error instanceof Error ? error.message : String(error);
+      console.warn(
+        `[claude-trace] failed to append trace log to ${this.logPath}: ${truncate(message, 180)}`,
+      );
+      return;
+    }
+
+    if (this.fileWriteFailureCount === 6) {
+      console.warn("[claude-trace] additional trace-log write failures suppressed.");
+    }
+  }
+}

src/ui/claude-trace-store.ts

@@ -0,0 +1,85 @@
+import { readFile } from "node:fs/promises";
+import { resolve } from "node:path";
+
+export type ClaudeTraceEvent = {
+  timestamp: string;
+  message: string;
+  stage?: string;
+  sessionId?: string;
+  sdkMessageType?: string;
+  sdkMessageSubtype?: string;
+  data?: unknown;
+} & Record<string, unknown>;
+
+type ClaudeTraceFilter = {
+  sessionId?: string;
+  limit?: number;
+};
+
+function safeParseLine(line: string): ClaudeTraceEvent | undefined {
+  const trimmed = line.trim();
+  if (!trimmed) {
+    return undefined;
+  }
+
+  try {
+    const parsed = JSON.parse(trimmed) as unknown;
+    if (!parsed || typeof parsed !== "object") {
+      return undefined;
+    }
+
+    const record = parsed as Record<string, unknown>;
+    if (typeof record.timestamp !== "string" || typeof record.message !== "string") {
+      return undefined;
+    }
+
+    return record as ClaudeTraceEvent;
+  } catch {
+    return undefined;
+  }
+}
+
+export async function readClaudeTraceEvents(logPath: string): Promise<ClaudeTraceEvent[]> {
+  const absolutePath = resolve(logPath);
+  let content = "";
+
+  try {
+    content = await readFile(absolutePath, "utf8");
+  } catch (error) {
+    if ((error as NodeJS.ErrnoException).code === "ENOENT") {
+      return [];
+    }
+    throw error;
+  }
+
+  const parsed: ClaudeTraceEvent[] = [];
+  for (const line of content.split(/\r?\n/)) {
+    const event = safeParseLine(line);
+    if (event) {
+      parsed.push(event);
+    }
+  }
+
+  parsed.sort((left, right) => left.timestamp.localeCompare(right.timestamp));
+  return parsed;
+}
+
+export function filterClaudeTraceEvents(
+  events: readonly ClaudeTraceEvent[],
+  filter: ClaudeTraceFilter,
+): ClaudeTraceEvent[] {
+  const filtered: ClaudeTraceEvent[] = [];
+
+  for (const event of events) {
+    if (filter.sessionId && event.sessionId !== filter.sessionId) {
+      continue;
+    }
+    filtered.push(event);
+  }
+
+  if (!filter.limit || filter.limit < 1 || filtered.length <= filter.limit) {
+    return filtered;
+  }
+
+  return filtered.slice(-filter.limit);
+}

src/ui/config-store.ts

@@ -23,6 +23,7 @@ export type LimitSettings = {
   topologyMaxDepth: number;
   topologyMaxRetries: number;
   relationshipMaxChildren: number;
+  mergeConflictMaxAttempts: number;
   portBase: number;
   portBlockSize: number;
   portBlockCount: number;
@@ -38,6 +39,7 @@ export type UiConfigSnapshot = {
     stateRoot: string;
     projectContextPath: string;
     runtimeEventLogPath: string;
+    claudeTraceLogPath: string;
     securityAuditLogPath: string;
   };
 };
@@ -88,6 +90,7 @@ function toLimits(config: Readonly<AppConfig>): LimitSettings {
     topologyMaxDepth: config.orchestration.maxDepth,
     topologyMaxRetries: config.orchestration.maxRetries,
     relationshipMaxChildren: config.orchestration.maxChildren,
+    mergeConflictMaxAttempts: config.orchestration.mergeConflictMaxAttempts,
     portBase: config.provisioning.portRange.basePort,
     portBlockSize: config.provisioning.portRange.blockSize,
     portBlockCount: config.provisioning.portRange.blockCount,
@@ -105,6 +108,7 @@ function toSnapshot(config: Readonly<AppConfig>, envFilePath: string): UiConfigS
       stateRoot: config.orchestration.stateRoot,
       projectContextPath: config.orchestration.projectContextPath,
       runtimeEventLogPath: config.runtimeEvents.logPath,
+      claudeTraceLogPath: config.provider.claudeObservability.logPath,
       securityAuditLogPath: config.security.auditLogPath,
     },
   };
@@ -170,6 +174,7 @@ export class UiConfigStore {
       AGENT_TOPOLOGY_MAX_DEPTH: String(input.topologyMaxDepth),
       AGENT_TOPOLOGY_MAX_RETRIES: String(input.topologyMaxRetries),
       AGENT_RELATIONSHIP_MAX_CHILDREN: String(input.relationshipMaxChildren),
+      AGENT_MERGE_CONFLICT_MAX_ATTEMPTS: String(input.mergeConflictMaxAttempts),
       AGENT_PORT_BASE: String(input.portBase),
       AGENT_PORT_BLOCK_SIZE: String(input.portBlockSize),
       AGENT_PORT_BLOCK_COUNT: String(input.portBlockCount),

src/ui/provider-executor.ts

@@ -10,6 +10,7 @@ import { isDomainEventType, type DomainEventEmission } from "../agents/domain-ev
 import type { ActorExecutionInput, ActorExecutionResult, ActorExecutor } from "../agents/pipeline.js";
 import { isRecord, type JsonObject, type JsonValue } from "../agents/types.js";
 import { createSessionContext, type SessionContext } from "../examples/session-context.js";
+import { ClaudeObservabilityLogger } from "./claude-observability.js";
 
 export type RunProvider = "codex" | "claude";
 
@@ -17,6 +18,7 @@ export type ProviderRunRuntime = {
   provider: RunProvider;
   config: Readonly<AppConfig>;
   sessionContext: SessionContext;
+  claudeObservability: ClaudeObservabilityLogger;
   close: () => Promise<void>;
 };
 
@@ -333,7 +335,7 @@ function buildActorPrompt(input: ActorExecutionInput): string {
         },
         events: [
           {
-            type: "requirements_defined | tasks_planned | code_committed | task_blocked | validation_passed | validation_failed | branch_merged",
+            type: "requirements_defined | tasks_planned | code_committed | task_ready_for_review | task_blocked | validation_passed | validation_failed | branch_merged | merge_conflict_detected | merge_conflict_resolved | merge_conflict_unresolved | merge_retry_started",
             payload: {
               summary: "optional",
               details: {},
@@ -416,6 +418,40 @@ type ClaudeTurnResult = {
   usage: ProviderUsage;
 };
 
+function toClaudeTraceContext(actorInput: ActorExecutionInput): {
+  sessionId: string;
+  nodeId: string;
+  attempt: number;
+  depth: number;
+} {
+  return {
+    sessionId: actorInput.sessionId,
+    nodeId: actorInput.node.id,
+    attempt: actorInput.attempt,
+    depth: actorInput.depth,
+  };
+}
+
+function toProviderUsageJson(usage: ProviderUsage): JsonObject {
+  const output: JsonObject = {};
+  if (typeof usage.tokenInput === "number") {
+    output.tokenInput = usage.tokenInput;
+  }
+  if (typeof usage.tokenOutput === "number") {
+    output.tokenOutput = usage.tokenOutput;
+  }
+  if (typeof usage.tokenTotal === "number") {
+    output.tokenTotal = usage.tokenTotal;
+  }
+  if (typeof usage.durationMs === "number") {
+    output.durationMs = usage.durationMs;
+  }
+  if (typeof usage.costUsd === "number") {
+    output.costUsd = usage.costUsd;
+  }
+  return output;
+}
+
 function buildClaudeOptions(input: {
   runtime: ProviderRunRuntime;
   actorInput: ActorExecutionInput;
@@ -433,6 +469,7 @@ function buildClaudeOptions(input: {
     ...runtime.sessionContext.runtimeInjection.env,
     ...buildClaudeAuthEnv(runtime.config.provider),
   };
+  const traceContext = toClaudeTraceContext(actorInput);
 
   return {
     maxTurns: CLAUDE_PROVIDER_MAX_TURNS,
@@ -449,6 +486,9 @@ function buildClaudeOptions(input: {
     canUseTool: actorInput.mcp.createClaudeCanUseTool(),
     cwd: runtime.sessionContext.runtimeInjection.workingDirectory,
     env: runtimeEnv,
+    ...runtime.claudeObservability.toOptionOverrides({
+      context: traceContext,
+    }),
     outputFormat: CLAUDE_OUTPUT_FORMAT,
   };
 }
@@ -458,10 +498,19 @@ async function runClaudeTurn(input: {
   actorInput: ActorExecutionInput;
   prompt: string;
 }): Promise<ClaudeTurnResult> {
+  const traceContext = toClaudeTraceContext(input.actorInput);
   const options = buildClaudeOptions({
     runtime: input.runtime,
     actorInput: input.actorInput,
   });
+  input.runtime.claudeObservability.recordQueryStarted({
+    context: traceContext,
+    data: {
+      ...(options.model ? { model: options.model } : {}),
+      maxTurns: options.maxTurns ?? CLAUDE_PROVIDER_MAX_TURNS,
+      cwd: input.runtime.sessionContext.runtimeInjection.workingDirectory,
+    },
+  });
 
   const startedAt = Date.now();
   const stream = query({
@@ -472,6 +521,7 @@ async function runClaudeTurn(input: {
   let resultText = "";
   let structuredOutput: unknown;
   let usage: ProviderUsage = {};
+  let messageCount = 0;
 
   const onAbort = (): void => {
     stream.close();
@@ -481,6 +531,12 @@ async function runClaudeTurn(input: {
 
   try {
     for await (const message of stream as AsyncIterable<SDKMessage>) {
+      messageCount += 1;
+      input.runtime.claudeObservability.recordMessage({
+        context: traceContext,
+        message,
+      });
+
       if (message.type !== "result") {
         continue;
       }
@@ -502,6 +558,12 @@ async function runClaudeTurn(input: {
         costUsd: message.total_cost_usd,
       };
     }
+  } catch (error) {
+    input.runtime.claudeObservability.recordQueryError({
+      context: traceContext,
+      error,
+    });
+    throw error;
   } finally {
     input.actorInput.signal.removeEventListener("abort", onAbort);
     stream.close();
@@ -512,9 +574,22 @@ async function runClaudeTurn(input: {
   }
 
   if (!resultText) {
-    throw new Error("Claude run completed without a final result.");
+    const error = new Error("Claude run completed without a final result.");
+    input.runtime.claudeObservability.recordQueryError({
+      context: traceContext,
+      error,
+    });
+    throw error;
   }
 
+  input.runtime.claudeObservability.recordQueryCompleted({
+    context: traceContext,
+    data: {
+      messageCount,
+      usage: toProviderUsageJson(usage),
+    },
+  });
+
   return {
     text: resultText,
     structuredOutput,
@@ -553,18 +628,30 @@ export async function createProviderRunRuntime(input: {
   provider: RunProvider;
   initialPrompt: string;
   config: Readonly<AppConfig>;
+  projectPath: string;
+  observabilityRootPath?: string;
 }): Promise<ProviderRunRuntime> {
   const sessionContext = await createSessionContext(input.provider, {
     prompt: input.initialPrompt,
     config: input.config,
+    workspaceRoot: input.projectPath,
+  });
+  const claudeObservability = new ClaudeObservabilityLogger({
+    workspaceRoot: input.observabilityRootPath ?? input.projectPath,
+    config: input.config.provider.claudeObservability,
   });
 
   return {
     provider: input.provider,
     config: input.config,
     sessionContext,
+    claudeObservability,
     close: async () => {
-      await sessionContext.close();
+      try {
+        await sessionContext.close();
+      } finally {
+        await claudeObservability.close();
+      }
     },
   };
 }

src/ui/public/app.js

@@ -2,6 +2,7 @@ const state = {
   config: null,
   manifests: [],
   sessions: [],
+  sessionMetadata: [],
   runs: [],
   selectedSessionId: "",
   selectedManifestPath: "",
@@ -25,13 +26,22 @@ const dom = {
   runProvider: document.querySelector("#run-provider"),
   runTopologyHint: document.querySelector("#run-topology-hint"),
   runFlags: document.querySelector("#run-flags"),
+  runRuntimeContext: document.querySelector("#run-runtime-context"),
   runValidationNodes: document.querySelector("#run-validation-nodes"),
   killRun: document.querySelector("#kill-run"),
   runStatus: document.querySelector("#run-status"),
+  sessionForm: document.querySelector("#session-form"),
+  sessionProjectPath: document.querySelector("#session-project-path"),
+  sessionCreate: document.querySelector("#session-create"),
+  sessionClose: document.querySelector("#session-close"),
+  sessionCloseMerge: document.querySelector("#session-close-merge"),
   nodeInspector: document.querySelector("#node-inspector"),
   eventsLimit: document.querySelector("#events-limit"),
   eventsRefresh: document.querySelector("#events-refresh"),
   eventFeed: document.querySelector("#event-feed"),
+  claudeEventsLimit: document.querySelector("#claude-events-limit"),
+  claudeEventsRefresh: document.querySelector("#claude-events-refresh"),
+  claudeEventFeed: document.querySelector("#claude-event-feed"),
   historyRefresh: document.querySelector("#history-refresh"),
   historyBody: document.querySelector("#history-body"),
   notificationsForm: document.querySelector("#notifications-form"),
@@ -77,6 +87,7 @@ const dom = {
   cfgTopologyDepth: document.querySelector("#cfg-topology-depth"),
   cfgTopologyRetries: document.querySelector("#cfg-topology-retries"),
   cfgRelationshipChildren: document.querySelector("#cfg-relationship-children"),
+  cfgMergeConflictAttempts: document.querySelector("#cfg-merge-conflict-attempts"),
   cfgPortBase: document.querySelector("#cfg-port-base"),
   cfgPortBlockSize: document.querySelector("#cfg-port-block-size"),
   cfgPortBlockCount: document.querySelector("#cfg-port-block-count"),
@@ -111,10 +122,15 @@ const MANIFEST_EVENT_TRIGGERS = [
   "requirements_defined",
   "tasks_planned",
   "code_committed",
+  "task_ready_for_review",
   "task_blocked",
   "validation_passed",
   "validation_failed",
   "branch_merged",
+  "merge_conflict_detected",
+  "merge_conflict_resolved",
+  "merge_conflict_unresolved",
+  "merge_retry_started",
 ];
 
 const RUN_MANIFEST_EDITOR_VALUE = "__editor__";
@@ -129,8 +145,12 @@ const LABEL_HELP_BY_CONTROL = Object.freeze({
   "run-provider": "Choose which model provider backend handles provider-mode runs.",
   "run-topology-hint": "Optional hint that nudges orchestration toward a topology strategy.",
   "run-flags": "Optional JSON object passed in as initial run flags.",
+  "run-runtime-context": "Optional JSON object of template values injected into persona prompts (for example repo or ticket).",
   "run-validation-nodes": "Optional comma-separated node IDs to simulate validation outcomes for.",
+  "session-project-path": "Absolute project path used when creating an explicit managed session.",
+  "session-close-merge": "When enabled, close will merge the session base branch back into the project branch.",
   "events-limit": "Set how many recent runtime events are loaded per refresh.",
+  "claude-events-limit": "Set how many Claude SDK trace records are loaded per refresh.",
   "cfg-webhook-url": "Webhook endpoint that receives runtime event notifications.",
   "cfg-webhook-severity": "Minimum severity level that triggers webhook notifications.",
   "cfg-webhook-always": "Event types that should always notify, regardless of severity.",
@@ -145,6 +165,7 @@ const LABEL_HELP_BY_CONTROL = Object.freeze({
   "cfg-topology-depth": "Maximum orchestration graph depth permitted by topology rules.",
   "cfg-topology-retries": "Maximum retry expansions allowed by topology orchestration.",
   "cfg-relationship-children": "Maximum children each persona relationship can spawn.",
+  "cfg-merge-conflict-attempts": "Maximum merge-conflict resolution attempts before emitting unresolved conflict events.",
   "cfg-port-base": "Starting port number for provisioning port allocations.",
   "cfg-port-block-size": "Number of ports reserved per allocated block.",
   "cfg-port-block-count": "Number of port blocks available for allocation.",
@@ -1029,6 +1050,7 @@ async function loadConfig() {
   dom.cfgTopologyDepth.value = String(limits.topologyMaxDepth);
   dom.cfgTopologyRetries.value = String(limits.topologyMaxRetries);
   dom.cfgRelationshipChildren.value = String(limits.relationshipMaxChildren);
+  dom.cfgMergeConflictAttempts.value = String(limits.mergeConflictMaxAttempts);
   dom.cfgPortBase.value = String(limits.portBase);
   dom.cfgPortBlockSize.value = String(limits.portBlockSize);
   dom.cfgPortBlockCount.value = String(limits.portBlockCount);
@@ -1060,11 +1082,28 @@ function statusChipClass(status) {
   return `status-chip status-${status || "unknown"}`;
 }
 
+function getSessionLifecycleStatus(sessionId) {
+  const metadata = state.sessionMetadata.find((entry) => entry?.sessionId === sessionId);
+  if (!metadata) {
+    return undefined;
+  }
+
+  const status = metadata.sessionStatus;
+  if (status === "active" || status === "suspended" || status === "closed" || status === "closed_with_conflicts") {
+    return status;
+  }
+  return undefined;
+}
+
 function renderRunsAndSessionsTable() {
   const rows = [];
 
   for (const session of state.sessions) {
-    const sessionStatus = session.status || "unknown";
+    const lifecycleStatus = getSessionLifecycleStatus(session.sessionId);
+    const sessionStatus =
+      lifecycleStatus === "closed" || lifecycleStatus === "closed_with_conflicts"
+        ? lifecycleStatus
+        : session.status || lifecycleStatus || "unknown";
     rows.push(`
       <tr data-session-id="${escapeHtml(session.sessionId)}">
         <td>${escapeHtml(session.sessionId)}</td>
@@ -1092,6 +1131,7 @@ function renderRunsAndSessionsTable() {
 async function loadSessions() {
   const payload = await apiRequest("/api/sessions");
   state.sessions = payload.sessions || [];
+  state.sessionMetadata = payload.sessionMetadata || [];
   state.runs = payload.runs || [];
 
   if (!state.selectedSessionId && state.sessions.length > 0) {
@@ -1457,6 +1497,43 @@ function renderEventFeed(events) {
   dom.eventFeed.innerHTML = rows || '<div class="event-row"><div class="event-time">-</div><div class="event-type">-</div><div>No runtime events.</div></div>';
 }
 
+function toClaudeRowSeverity(event) {
+  const stage = String(event?.stage || "");
+  const type = String(event?.sdkMessageType || "");
+  if (stage === "query.error") {
+    return "critical";
+  }
+  if (stage === "query.stderr" || (type === "result" && String(event?.sdkMessageSubtype || "").startsWith("error_"))) {
+    return "warning";
+  }
+  return "info";
+}
+
+function renderClaudeTraceFeed(events) {
+  const rows = [...events]
+    .reverse()
+    .map((event) => {
+      const ts = new Date(event.timestamp).toLocaleTimeString();
+      const stage = String(event.stage || "query.message");
+      const sdkMessageType = String(event.sdkMessageType || "");
+      const sdkMessageSubtype = String(event.sdkMessageSubtype || "");
+      const typeLabel = sdkMessageType
+        ? `${stage}/${sdkMessageType}${sdkMessageSubtype ? `:${sdkMessageSubtype}` : ""}`
+        : stage;
+      const message = typeof event.message === "string" ? event.message : JSON.stringify(event.message || "");
+      return `
+        <div class="event-row ${escapeHtml(toClaudeRowSeverity(event))}">
+          <div class="event-time">${escapeHtml(ts)}</div>
+          <div class="event-type">${escapeHtml(typeLabel)}</div>
+          <div>${escapeHtml(message)}</div>
+        </div>
+      `;
+    })
+    .join("");
+
+  dom.claudeEventFeed.innerHTML = rows || '<div class="event-row"><div class="event-time">-</div><div class="event-type">-</div><div>No Claude trace events.</div></div>';
+}
+
 async function refreshEvents() {
   const limit = Number(dom.eventsLimit.value || "150");
   const params = new URLSearchParams({
@@ -1471,6 +1548,20 @@ async function refreshEvents() {
   renderEventFeed(payload.events || []);
 }
 
+async function refreshClaudeTrace() {
+  const limit = Number(dom.claudeEventsLimit.value || "150");
+  const params = new URLSearchParams({
+    limit: String(limit),
+  });
+
+  if (state.selectedSessionId) {
+    params.set("sessionId", state.selectedSessionId);
+  }
+
+  const payload = await apiRequest(`/api/claude-trace?${params.toString()}`);
+  renderClaudeTraceFeed(payload.events || []);
+}
+
 async function startRun(event) {
   event.preventDefault();
 
@@ -1486,6 +1577,12 @@ async function startRun(event) {
     return;
   }
 
+  const runtimeContext = parseJsonSafe(dom.runRuntimeContext.value, {});
+  if (typeof runtimeContext !== "object" || Array.isArray(runtimeContext) || !runtimeContext) {
+    showRunStatus("Runtime Context Overrides must be a JSON object.", true);
+    return;
+  }
+
   const manifestSelection = dom.runManifestSelect.value.trim();
 
   const payload = {
@@ -1494,9 +1591,21 @@ async function startRun(event) {
     provider: dom.runProvider.value,
     topologyHint: dom.runTopologyHint.value.trim() || undefined,
     initialFlags: flags,
+    runtimeContextOverrides: runtimeContext,
     simulateValidationNodeIds: fromCsv(dom.runValidationNodes.value),
   };
 
+  const selectedSessionMetadata = state.sessionMetadata.find(
+    (entry) => entry?.sessionId === state.selectedSessionId,
+  );
+  if (
+    selectedSessionMetadata &&
+    (selectedSessionMetadata.sessionStatus === "active" ||
+      selectedSessionMetadata.sessionStatus === "suspended")
+  ) {
+    payload.sessionId = selectedSessionMetadata.sessionId;
+  }
+
   if (manifestSelection === RUN_MANIFEST_EDITOR_VALUE) {
     const manifestFromEditor = parseJsonSafe(dom.manifestEditor.value, null);
     if (!manifestFromEditor) {
@@ -1527,6 +1636,7 @@ async function startRun(event) {
     dom.sessionSelect.value = run.sessionId;
     await refreshGraph();
     await refreshEvents();
+    await refreshClaudeTrace();
   } catch (error) {
     showRunStatus(error instanceof Error ? error.message : String(error), true);
   }
@@ -1547,6 +1657,67 @@ async function cancelActiveRun() {
     await loadSessions();
     await refreshGraph();
     await refreshEvents();
+    await refreshClaudeTrace();
+  } catch (error) {
+    showRunStatus(error instanceof Error ? error.message : String(error), true);
+  }
+}
+
+async function createSessionFromUi() {
+  const projectPath = dom.sessionProjectPath.value.trim();
+  if (!projectPath) {
+    showRunStatus("Project path is required to create a session.", true);
+    return;
+  }
+
+  try {
+    const payload = await apiRequest("/api/sessions", {
+      method: "POST",
+      body: JSON.stringify({
+        projectPath,
+      }),
+    });
+
+    const created = payload.session;
+    if (created?.sessionId) {
+      state.selectedSessionId = created.sessionId;
+      showRunStatus(`Session ${created.sessionId} created.`);
+    } else {
+      showRunStatus("Session created.");
+    }
+    await loadSessions();
+    if (state.selectedSessionId) {
+      dom.sessionSelect.value = state.selectedSessionId;
+      await refreshGraph();
+      await refreshEvents();
+      await refreshClaudeTrace();
+    }
+  } catch (error) {
+    showRunStatus(error instanceof Error ? error.message : String(error), true);
+  }
+}
+
+async function closeSelectedSessionFromUi() {
+  const sessionId = state.selectedSessionId || dom.sessionSelect.value;
+  if (!sessionId) {
+    showRunStatus("Select a session before closing.", true);
+    return;
+  }
+
+  try {
+    const payload = await apiRequest(`/api/sessions/${encodeURIComponent(sessionId)}/close`, {
+      method: "POST",
+      body: JSON.stringify({
+        mergeToProject: dom.sessionCloseMerge.checked,
+      }),
+    });
+
+    const nextStatus = payload?.session?.sessionStatus || "closed";
+    showRunStatus(`Session ${sessionId} closed with status ${nextStatus}.`);
+    await loadSessions();
+    await refreshGraph();
+    await refreshEvents();
+    await refreshClaudeTrace();
   } catch (error) {
     showRunStatus(error instanceof Error ? error.message : String(error), true);
   }
@@ -1597,6 +1768,7 @@ async function saveLimits(event) {
     topologyMaxDepth: Number(dom.cfgTopologyDepth.value),
     topologyMaxRetries: Number(dom.cfgTopologyRetries.value),
     relationshipMaxChildren: Number(dom.cfgRelationshipChildren.value),
+    mergeConflictMaxAttempts: Number(dom.cfgMergeConflictAttempts.value),
     portBase: Number(dom.cfgPortBase.value),
     portBlockSize: Number(dom.cfgPortBlockSize.value),
     portBlockCount: Number(dom.cfgPortBlockCount.value),
@@ -1695,6 +1867,7 @@ function bindUiEvents() {
     state.selectedSessionId = dom.sessionSelect.value;
     await refreshGraph();
     await refreshEvents();
+    await refreshClaudeTrace();
   });
 
   dom.graphManifestSelect.addEventListener("change", async () => {
@@ -1714,15 +1887,26 @@ function bindUiEvents() {
     await refreshEvents();
   });
 
+  dom.claudeEventsRefresh.addEventListener("click", async () => {
+    await refreshClaudeTrace();
+  });
+
   dom.historyRefresh.addEventListener("click", async () => {
     await loadSessions();
     await refreshGraph();
+    await refreshClaudeTrace();
   });
 
   dom.runForm.addEventListener("submit", startRun);
   dom.killRun.addEventListener("click", () => {
     void cancelActiveRun();
   });
+  dom.sessionCreate.addEventListener("click", () => {
+    void createSessionFromUi();
+  });
+  dom.sessionClose.addEventListener("click", () => {
+    void closeSelectedSessionFromUi();
+  });
 
   dom.notificationsForm.addEventListener("submit", (event) => {
     void saveNotifications(event);
@@ -1830,6 +2014,7 @@ async function refreshAll() {
 
   await refreshGraph();
   await refreshEvents();
+  await refreshClaudeTrace();
 }
 
 async function initialize() {
@@ -1860,6 +2045,10 @@ async function initialize() {
     void refreshEvents();
   }, 3000);
 
+  setInterval(() => {
+    void refreshClaudeTrace();
+  }, 3000);
+
   setInterval(() => {
     void refreshGraph();
   }, 7000);

src/ui/public/index.html

@@ -75,6 +75,10 @@
               Initial Flags (JSON)
               <textarea id="run-flags" rows="3" placeholder='{"needs_bootstrap": true}'></textarea>
             </label>
+            <label>
+              Runtime Context Overrides (JSON)
+              <textarea id="run-runtime-context" rows="3" placeholder='{"repo":"ai_ops","ticket":"AIOPS-123"}'></textarea>
+            </label>
             <label>
               Simulate Validation Nodes (CSV)
               <input id="run-validation-nodes" type="text" placeholder="coder-1,qa-1" />
@@ -86,6 +90,23 @@
           </form>
           <div id="run-status" class="subtle"></div>
 
+          <div class="divider"></div>
+          <h3>Session Controls</h3>
+          <form id="session-form" class="stacked-form">
+            <label>
+              Project Path (absolute)
+              <input id="session-project-path" type="text" placeholder="/abs/path/to/project" />
+            </label>
+            <label class="inline-checkbox">
+              <input id="session-close-merge" type="checkbox" />
+              Merge base into project when closing selected session
+            </label>
+            <div class="inline-actions">
+              <button id="session-create" type="button">Create Session</button>
+              <button id="session-close" type="button">Close Selected Session</button>
+            </div>
+          </form>
+
           <div class="divider"></div>
           <h3>Node Inspector</h3>
           <div id="node-inspector" class="inspector empty">Select a graph node.</div>
@@ -109,6 +130,24 @@
           <div id="event-feed" class="event-feed"></div>
         </section>
 
+        <section class="panel claude-panel">
+          <div class="panel-head">
+            <h2>Claude Trace</h2>
+            <div class="panel-actions">
+              <label>
+                Limit
+                <select id="claude-events-limit">
+                  <option value="80">80</option>
+                  <option value="150" selected>150</option>
+                  <option value="300">300</option>
+                </select>
+              </label>
+              <button id="claude-events-refresh" type="button">Refresh</button>
+            </div>
+          </div>
+          <div id="claude-event-feed" class="event-feed claude-event-feed"></div>
+        </section>
+
         <section class="panel history-panel">
           <div class="panel-head">
             <h2>Run History</h2>
@@ -192,6 +231,7 @@
               <label>AGENT_TOPOLOGY_MAX_DEPTH<input id="cfg-topology-depth" type="number" min="1" /></label>
               <label>AGENT_TOPOLOGY_MAX_RETRIES<input id="cfg-topology-retries" type="number" min="0" /></label>
               <label>AGENT_RELATIONSHIP_MAX_CHILDREN<input id="cfg-relationship-children" type="number" min="1" /></label>
+              <label>AGENT_MERGE_CONFLICT_MAX_ATTEMPTS<input id="cfg-merge-conflict-attempts" type="number" min="1" /></label>
               <label>AGENT_PORT_BASE<input id="cfg-port-base" type="number" min="1" /></label>
               <label>AGENT_PORT_BLOCK_SIZE<input id="cfg-port-block-size" type="number" min="1" /></label>
               <label>AGENT_PORT_BLOCK_COUNT<input id="cfg-port-block-count" type="number" min="1" /></label>

src/ui/public/styles.css

@@ -79,7 +79,8 @@ p {
   grid-template-columns: minmax(0, 2fr) minmax(280px, 1fr);
   grid-template-areas:
     "graph side"
-    "feed history"
+    "feed claude"
+    "history history"
     "config config";
 }
 
@@ -129,6 +130,10 @@ p {
   grid-area: history;
 }
 
+.claude-panel {
+  grid-area: claude;
+}
+
 .config-panel {
   grid-area: config;
 }
@@ -142,6 +147,12 @@ label {
   letter-spacing: 0.015em;
 }
 
+label.inline-checkbox {
+  flex-direction: row;
+  align-items: center;
+  gap: 0.45rem;
+}
+
 input,
 select,
 textarea,
@@ -308,6 +319,14 @@ button.danger {
   color: var(--critical);
 }
 
+.claude-event-feed .event-row {
+  grid-template-columns: 110px 150px 1fr;
+}
+
+.claude-event-feed .event-type {
+  font-size: 0.7rem;
+}
+
 .history-table {
   width: 100%;
   border-collapse: collapse;
@@ -353,6 +372,22 @@ button.danger {
   border-color: rgba(255, 201, 74, 0.6);
 }
 
+.status-active {
+  color: var(--accent-cool);
+  border-color: rgba(86, 195, 255, 0.6);
+}
+
+.status-suspended,
+.status-closed_with_conflicts {
+  color: var(--warn);
+  border-color: rgba(255, 201, 74, 0.6);
+}
+
+.status-closed {
+  color: var(--muted);
+  border-color: rgba(155, 184, 207, 0.45);
+}
+
 .status-unknown {
   color: var(--muted);
   border-color: rgba(155, 184, 207, 0.45);
@@ -463,6 +498,7 @@ button.danger {
       "graph"
       "side"
       "feed"
+      "claude"
       "history"
       "config";
   }

src/ui/run-service.ts

@@ -3,11 +3,17 @@ import { mkdir, readFile, writeFile } from "node:fs/promises";
 import { resolve } from "node:path";
 import { SchemaDrivenExecutionEngine } from "../agents/orchestration.js";
 import { parseAgentManifest, type AgentManifest } from "../agents/manifest.js";
+import { FileSystemProjectContextStore } from "../agents/project-context.js";
 import type {
   ActorExecutionResult,
   ActorExecutor,
   PipelineAggregateStatus,
 } from "../agents/pipeline.js";
+import {
+  FileSystemSessionMetadataStore,
+  SessionWorktreeManager,
+  type SessionMetadata,
+} from "../agents/session-lifecycle.js";
 import { loadConfig, type AppConfig } from "../config.js";
 import { parseEnvFile } from "./env-store.js";
 import {
@@ -240,6 +246,19 @@ async function loadRuntimeConfig(envPath: string): Promise<Readonly<AppConfig>>
   });
 }
 
+function resolveRuntimePaths(input: {
+  workspaceRoot: string;
+  config: Readonly<AppConfig>;
+}): {
+  stateRoot: string;
+  worktreeRoot: string;
+} {
+  return {
+    stateRoot: resolve(input.workspaceRoot, input.config.orchestration.stateRoot),
+    worktreeRoot: resolve(input.workspaceRoot, input.config.provisioning.gitWorktree.rootDirectory),
+  };
+}
+
 async function writeRunMeta(input: {
   stateRoot: string;
   sessionId: string;
@@ -319,6 +338,102 @@ export class UiRunService {
     this.envFilePath = resolve(this.workspaceRoot, input.envFilePath ?? ".env");
   }
 
+  private async loadRuntime(): Promise<{
+    config: Readonly<AppConfig>;
+    stateRoot: string;
+    sessionStore: FileSystemSessionMetadataStore;
+    worktreeManager: SessionWorktreeManager;
+  }> {
+    const config = await loadRuntimeConfig(this.envFilePath);
+    const paths = resolveRuntimePaths({
+      workspaceRoot: this.workspaceRoot,
+      config,
+    });
+
+    return {
+      config,
+      stateRoot: paths.stateRoot,
+      sessionStore: new FileSystemSessionMetadataStore({
+        stateRoot: paths.stateRoot,
+      }),
+      worktreeManager: new SessionWorktreeManager({
+        worktreeRoot: paths.worktreeRoot,
+        baseRef: config.provisioning.gitWorktree.baseRef,
+      }),
+    };
+  }
+
+  async createSession(input: {
+    projectPath: string;
+    sessionId?: string;
+  }): Promise<SessionMetadata> {
+    const runtime = await this.loadRuntime();
+    const sessionId = input.sessionId?.trim() || toSessionId();
+    const baseWorkspacePath = runtime.worktreeManager.resolveBaseWorkspacePath(sessionId);
+    const session = await runtime.sessionStore.createSession({
+      sessionId,
+      projectPath: resolve(input.projectPath),
+      baseWorkspacePath,
+    });
+
+    await runtime.worktreeManager.initializeSessionBaseWorkspace({
+      sessionId: session.sessionId,
+      projectPath: session.projectPath,
+      baseWorkspacePath: session.baseWorkspacePath,
+    });
+
+    return session;
+  }
+
+  async listSessions(): Promise<SessionMetadata[]> {
+    const runtime = await this.loadRuntime();
+    return runtime.sessionStore.listSessions();
+  }
+
+  async readSession(sessionId: string): Promise<SessionMetadata | undefined> {
+    const runtime = await this.loadRuntime();
+    return runtime.sessionStore.readSession(sessionId);
+  }
+
+  async closeSession(input: {
+    sessionId: string;
+    mergeToProject?: boolean;
+  }): Promise<SessionMetadata> {
+    const runtime = await this.loadRuntime();
+    const session = await runtime.sessionStore.readSession(input.sessionId);
+    if (!session) {
+      throw new Error(`Session \"${input.sessionId}\" does not exist.`);
+    }
+
+    const sessionProjectContextStore = new FileSystemProjectContextStore({
+      filePath: runtime.sessionStore.getSessionProjectContextPath(session.sessionId),
+    });
+    const projectContext = await sessionProjectContextStore.readState();
+    const taskWorktreePaths = projectContext.taskQueue
+      .map((task) => task.worktreePath)
+      .filter((path): path is string => typeof path === "string" && path.trim().length > 0);
+
+    const outcome = await runtime.worktreeManager.closeSession({
+      session,
+      taskWorktreePaths,
+      mergeBaseIntoProject: input.mergeToProject === true,
+    });
+
+    if (outcome.kind === "fatal_error") {
+      throw new Error(`Session close failed: ${outcome.error}`);
+    }
+
+    if (outcome.kind === "conflict") {
+      return runtime.sessionStore.updateSession(session.sessionId, {
+        sessionStatus: "closed_with_conflicts",
+      });
+    }
+
+    return runtime.sessionStore.updateSession(session.sessionId, {
+      sessionStatus: "closed",
+    });
+  }
+
   listRuns(): RunRecord[] {
     const output = [...this.runHistory.values()].sort((left, right) => {
       return right.startedAt.localeCompare(left.startedAt);
@@ -331,11 +446,24 @@ export class UiRunService {
   }
 
   async startRun(input: StartRunInput): Promise<RunRecord> {
-    const config = await loadRuntimeConfig(this.envFilePath);
+    const runtime = await this.loadRuntime();
+    const config = runtime.config;
     const manifest = parseAgentManifest(input.manifest);
     const executionMode = input.executionMode ?? "mock";
     const provider = input.provider ?? "codex";
     const sessionId = input.sessionId?.trim() || toSessionId();
+    const session = input.sessionId?.trim()
+      ? await runtime.sessionStore.readSession(sessionId)
+      : undefined;
+    if (input.sessionId?.trim() && !session) {
+      throw new Error(`Session \"${sessionId}\" does not exist.`);
+    }
+    if (
+      session &&
+      (session.sessionStatus === "closed" || session.sessionStatus === "closed_with_conflicts")
+    ) {
+      throw new Error(`Session \"${sessionId}\" is closed and cannot run new tasks.`);
+    }
     const runId = randomUUID();
     const controller = new AbortController();
 
@@ -359,6 +487,8 @@ export class UiRunService {
             provider,
             initialPrompt: input.prompt,
             config,
+            projectPath: session?.baseWorkspacePath ?? this.workspaceRoot,
+            observabilityRootPath: this.workspaceRoot,
           });
         }
 
@@ -376,11 +506,20 @@ export class UiRunService {
           actorExecutors,
           settings: {
             workspaceRoot: this.workspaceRoot,
-            stateRoot: config.orchestration.stateRoot,
+            stateRoot: runtime.stateRoot,
-            projectContextPath: config.orchestration.projectContextPath,
+            projectContextPath: session
+              ? runtime.sessionStore.getSessionProjectContextPath(sessionId)
+              : resolve(this.workspaceRoot, config.orchestration.projectContextPath),
             runtimeContext: {
               ui_mode: executionMode,
               run_provider: provider,
+              ...(session
+                ? {
+                    session_id: sessionId,
+                    project_path: session.projectPath,
+                    base_workspace_path: session.baseWorkspacePath,
+                  }
+                : {}),
               ...(input.runtimeContextOverrides ?? {}),
             },
           },
@@ -388,7 +527,7 @@ export class UiRunService {
         });
 
         await writeRunMeta({
-          stateRoot: config.orchestration.stateRoot,
+          stateRoot: runtime.stateRoot,
           sessionId,
           run: record,
         });
@@ -404,6 +543,7 @@ export class UiRunService {
             },
           },
           signal: controller.signal,
+          ...(session ? { sessionMetadata: session } : {}),
         });
 
         const completedRecord = this.runHistory.get(runId);
@@ -419,7 +559,7 @@ export class UiRunService {
         this.runHistory.set(runId, next);
 
         await writeRunMeta({
-          stateRoot: config.orchestration.stateRoot,
+          stateRoot: runtime.stateRoot,
           sessionId,
           run: next,
         });
@@ -439,7 +579,7 @@ export class UiRunService {
         this.runHistory.set(runId, next);
 
         await writeRunMeta({
-          stateRoot: config.orchestration.stateRoot,
+          stateRoot: runtime.stateRoot,
           sessionId,
           run: next,
         });

src/ui/server.ts

@@ -6,6 +6,7 @@ import { buildSessionGraphInsight, buildSessionSummaries } from "./session-insig
 import { UiConfigStore, type LimitSettings, type RuntimeNotificationSettings, type SecurityPolicySettings } from "./config-store.js";
 import { ManifestStore } from "./manifest-store.js";
 import { filterRuntimeEvents, readRuntimeEvents } from "./runtime-events-store.js";
+import { filterClaudeTraceEvents, readClaudeTraceEvents } from "./claude-trace-store.js";
 import { parseJsonBody, sendJson, methodNotAllowed, notFound, serveStaticFile } from "./http-utils.js";
 import { readRunMetaBySession, UiRunService, type RunExecutionMode } from "./run-service.js";
 import type { RunProvider } from "./provider-executor.js";
@@ -23,6 +24,14 @@ type StartRunRequest = {
   provider?: RunProvider;
 };
 
+type CreateSessionRequest = {
+  projectPath: string;
+};
+
+type CloseSessionRequest = {
+  mergeToProject?: boolean;
+};
+
 function parsePort(value: string | undefined): number {
   const parsed = Number(value ?? "4317");
   if (!Number.isInteger(parsed) || parsed < 1 || parsed > 65535) {
@@ -102,14 +111,23 @@ function ensureProvider(value: unknown): RunProvider {
   return value === "claude" ? "claude" : "codex";
 }
 
+function ensureNonEmptyString(value: unknown, field: string): string {
+  if (typeof value !== "string" || value.trim().length === 0) {
+    throw new Error(`Field "${field}" is required.`);
+  }
+  return value.trim();
+}
+
 async function readRuntimePaths(configStore: UiConfigStore, workspaceRoot: string): Promise<{
   stateRoot: string;
   runtimeEventLogPath: string;
+  claudeTraceLogPath: string;
 }> {
   const snapshot = await configStore.readSnapshot();
   return {
     stateRoot: resolve(workspaceRoot, snapshot.paths.stateRoot),
     runtimeEventLogPath: resolve(workspaceRoot, snapshot.paths.runtimeEventLogPath),
+    claudeTraceLogPath: resolve(workspaceRoot, snapshot.paths.claudeTraceLogPath),
   };
 }
 
@@ -298,7 +316,42 @@ async function handleApiRequest(input: {
       return true;
     }
 
+    if (pathname === "/api/claude-trace") {
+      if (method !== "GET") {
+        methodNotAllowed(response);
+        return true;
+      }
+
+      const { claudeTraceLogPath } = await readRuntimePaths(configStore, workspaceRoot);
+      const limit = parseLimit(requestUrl.searchParams.get("limit"), 200);
+      const sessionId = requestUrl.searchParams.get("sessionId") ?? undefined;
+      const events = filterClaudeTraceEvents(await readClaudeTraceEvents(claudeTraceLogPath), {
+        ...(sessionId ? { sessionId } : {}),
+        limit,
+      });
+
+      sendJson(response, 200, {
+        ok: true,
+        events,
+      });
+      return true;
+    }
+
     if (pathname === "/api/sessions") {
+      if (method === "POST") {
+        const body = await parseJsonBody<CreateSessionRequest>(request);
+        const projectPath = ensureNonEmptyString(body.projectPath, "projectPath");
+        const session = await runService.createSession({
+          projectPath,
+        });
+
+        sendJson(response, 201, {
+          ok: true,
+          session,
+        });
+        return true;
+      }
+
       if (method !== "GET") {
         methodNotAllowed(response);
         return true;
@@ -309,10 +362,12 @@ async function handleApiRequest(input: {
         stateRoot,
         runtimeEventLogPath,
       });
+      const metadata = await runService.listSessions();
 
       sendJson(response, 200, {
         ok: true,
         sessions,
+        sessionMetadata: metadata,
         runs: runService.listRuns(),
       });
       return true;
@@ -362,6 +417,118 @@ async function handleApiRequest(input: {
       return true;
     }
 
+    if (pathname.startsWith("/api/sessions/") && pathname.endsWith("/run")) {
+      if (method !== "POST") {
+        methodNotAllowed(response);
+        return true;
+      }
+
+      const sessionId = toRelativePathFromApi(pathname.slice("/api/sessions/".length, -"/run".length));
+      if (!sessionId) {
+        sendJson(response, 400, {
+          ok: false,
+          error: "Session id is required.",
+        });
+        return true;
+      }
+
+      const body = await parseJsonBody<StartRunRequest>(request);
+      if (typeof body.prompt !== "string" || body.prompt.trim().length === 0) {
+        sendJson(response, 400, {
+          ok: false,
+          error: 'Field "prompt" is required.',
+        });
+        return true;
+      }
+
+      const manifestSource = (() => {
+        if (body.manifest !== undefined) {
+          return body.manifest;
+        }
+        if (typeof body.manifestPath === "string" && body.manifestPath.trim().length > 0) {
+          return undefined;
+        }
+        return undefined;
+      })();
+
+      const resolvedManifest = manifestSource ?? (() => {
+        if (!body.manifestPath) {
+          return undefined;
+        }
+        return body.manifestPath;
+      })();
+
+      let manifest: unknown;
+      if (typeof resolvedManifest === "string") {
+        manifest = (await manifestStore.read(resolvedManifest)).source;
+      } else if (resolvedManifest !== undefined) {
+        manifest = resolvedManifest;
+      }
+
+      if (!manifest) {
+        sendJson(response, 400, {
+          ok: false,
+          error: "A manifest or manifestPath is required to start a run.",
+        });
+        return true;
+      }
+
+      const record = await runService.startRun({
+        prompt: body.prompt,
+        manifest,
+        manifestPath: body.manifestPath,
+        sessionId,
+        topologyHint: body.topologyHint,
+        initialFlags: ensureBooleanRecord(body.initialFlags),
+        runtimeContextOverrides: ensureRuntimeContext(body.runtimeContextOverrides),
+        simulateValidationNodeIds: ensureStringArray(body.simulateValidationNodeIds),
+        executionMode: ensureExecutionMode(body.executionMode),
+        provider: ensureProvider(body.provider),
+      });
+
+      sendJson(response, 202, {
+        ok: true,
+        run: record,
+      });
+      return true;
+    }
+
+    if (pathname.startsWith("/api/sessions/") && pathname.endsWith("/close")) {
+      if (method !== "POST") {
+        methodNotAllowed(response);
+        return true;
+      }
+
+      const sessionId = toRelativePathFromApi(pathname.slice("/api/sessions/".length, -"/close".length));
+      if (!sessionId) {
+        sendJson(response, 400, {
+          ok: false,
+          error: "Session id is required.",
+        });
+        return true;
+      }
+
+      let body: CloseSessionRequest = {};
+      try {
+        body = await parseJsonBody<CloseSessionRequest>(request);
+      } catch (error) {
+        const message = error instanceof Error ? error.message : String(error);
+        if (message !== "Request body is required.") {
+          throw error;
+        }
+      }
+      const session = await runService.closeSession({
+        sessionId,
+        mergeToProject: body.mergeToProject === true,
+      });
+
+      sendJson(response, 200, {
+        ok: true,
+        session,
+      });
+      return true;
+    }
+
     if (pathname === "/api/runs") {
       if (method === "GET") {
         sendJson(response, 200, {

tests/claude-observability.test.ts

@@ -0,0 +1,296 @@
+import test from "node:test";
+import assert from "node:assert/strict";
+import { mkdtemp, readFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import type { SDKMessage } from "@anthropic-ai/claude-agent-sdk";
+import { ClaudeObservabilityLogger, summarizeClaudeMessage } from "../src/ui/claude-observability.js";
+
+test("summarizeClaudeMessage returns compact result metadata in summary mode", () => {
+  const message = {
+    type: "result",
+    subtype: "success",
+    stop_reason: "end_turn",
+    num_turns: 1,
+    total_cost_usd: 0.0012,
+    usage: {
+      input_tokens: 120,
+      output_tokens: 40,
+    },
+    result: "{\"status\":\"success\"}",
+    duration_ms: 40,
+    duration_api_ms: 32,
+    is_error: false,
+    modelUsage: {},
+    permission_denials: [],
+    uuid: "uuid-1",
+    session_id: "sdk-session-1",
+  } as unknown as SDKMessage;
+
+  const summary = summarizeClaudeMessage(message, "summary");
+
+  assert.equal(summary.messageType, "result");
+  assert.equal(summary.messageSubtype, "success");
+  assert.equal(summary.sdkSessionId, "sdk-session-1");
+  assert.equal(summary.summary, "Claude query result success.");
+  assert.equal(summary.data?.numTurns, 1);
+  const usage = summary.data?.usage as Record<string, unknown> | undefined;
+  assert.equal(usage?.input_tokens, 120);
+});
+
+test("summarizeClaudeMessage redacts sensitive fields in full mode", () => {
+  const message = {
+    type: "system",
+    subtype: "init",
+    session_id: "sdk-session-2",
+    uuid: "uuid-2",
+    apiKey: "top-secret",
+    nested: {
+      authToken: "really-secret",
+      ok: true,
+    },
+  } as unknown as SDKMessage;
+
+  const summary = summarizeClaudeMessage(message, "full");
+  const payload = summary.data?.message as Record<string, unknown> | undefined;
+  const nested = payload?.nested as Record<string, unknown> | undefined;
+
+  assert.equal(summary.messageType, "system");
+  assert.equal(summary.messageSubtype, "init");
+  assert.equal(payload?.apiKey, "[redacted]");
+  assert.equal(nested?.authToken, "[redacted]");
+  assert.equal(nested?.ok, true);
+});
+
+test("ClaudeObservabilityLogger samples tool_progress messages for stdout", () => {
+  const lines: string[] = [];
+  const originalLog = console.log;
+  const originalNow = Date.now;
+  let now = 1000;
+
+  console.log = (line?: unknown) => {
+    lines.push(String(line ?? ""));
+  };
+  Date.now = () => now;
+
+  try {
+    const logger = new ClaudeObservabilityLogger({
+      workspaceRoot: process.cwd(),
+      config: {
+        mode: "stdout",
+        verbosity: "summary",
+        logPath: ".ai_ops/events/claude-trace.ndjson",
+        includePartialMessages: false,
+        debug: false,
+      },
+    });
+
+    const context = {
+      sessionId: "session-a",
+      nodeId: "node-a",
+      attempt: 1,
+      depth: 0,
+    };
+
+    const makeMessage = (): SDKMessage =>
+      ({
+        type: "tool_progress",
+        tool_name: "Bash",
+        tool_use_id: "tool-1",
+        parent_tool_use_id: null,
+        elapsed_time_seconds: 1,
+        uuid: "uuid-tool",
+        session_id: "sdk-session-tool",
+      }) as unknown as SDKMessage;
+
+    logger.recordMessage({
+      context,
+      message: makeMessage(),
+    });
+
+    now += 300;
+    logger.recordMessage({
+      context,
+      message: makeMessage(),
+    });
+
+    now += 1200;
+    logger.recordMessage({
+      context,
+      message: makeMessage(),
+    });
+
+    assert.equal(lines.length, 2);
+    assert.match(lines[0] ?? "", /^\[claude-trace\] /);
+    assert.match(lines[1] ?? "", /"suppressedSinceLastEmit":1/);
+  } finally {
+    console.log = originalLog;
+    Date.now = originalNow;
+  }
+});
+
+test("ClaudeObservabilityLogger keeps assistant/user message records in file output", async () => {
+  const workspace = await mkdtemp(join(tmpdir(), "claude-obsv-test-"));
+  const logPath = ".ai_ops/events/claude-trace.ndjson";
+  const logger = new ClaudeObservabilityLogger({
+    workspaceRoot: workspace,
+    config: {
+      mode: "file",
+      verbosity: "summary",
+      logPath,
+      includePartialMessages: false,
+      debug: false,
+    },
+  });
+
+  const context = {
+    sessionId: "session-file",
+    nodeId: "node-file",
+    attempt: 1,
+    depth: 0,
+  };
+
+  logger.recordQueryStarted({
+    context,
+  });
+  logger.recordMessage({
+    context,
+    message: {
+      type: "assistant",
+      uuid: "assistant-1",
+      session_id: "sdk-file-1",
+      parent_tool_use_id: null,
+      message: {} as never,
+    } as unknown as SDKMessage,
+  });
+  logger.recordMessage({
+    context,
+    message: {
+      type: "user",
+      uuid: "user-1",
+      session_id: "sdk-file-1",
+      parent_tool_use_id: null,
+      message: {} as never,
+    } as unknown as SDKMessage,
+  });
+  logger.recordMessage({
+    context,
+    message: {
+      type: "result",
+      subtype: "success",
+      stop_reason: "end_turn",
+      num_turns: 1,
+      total_cost_usd: 0.0012,
+      usage: {
+        input_tokens: 100,
+        output_tokens: 20,
+      },
+      result: "{}",
+      duration_ms: 10,
+      duration_api_ms: 9,
+      is_error: false,
+      modelUsage: {},
+      permission_denials: [],
+      uuid: "result-1",
+      session_id: "sdk-file-1",
+    } as unknown as SDKMessage,
+  });
+  logger.recordQueryCompleted({
+    context,
+  });
+
+  await logger.close();
+
+  const filePath = join(workspace, logPath);
+  const content = await readFile(filePath, "utf8");
+  const lines = content.split(/\r?\n/).filter((line) => line.trim().length > 0);
+  const records = lines.map((line) => JSON.parse(line) as Record<string, unknown>);
+  const messageTypes = records
+    .map((record) => record.sdkMessageType)
+    .filter((value) => typeof value === "string");
+
+  assert.equal(messageTypes.includes("assistant"), true);
+  assert.equal(messageTypes.includes("user"), true);
+  assert.equal(messageTypes.includes("result"), true);
+});
+
+test("summarizeClaudeMessage maps task_notification system subtype", () => {
+  const message = {
+    type: "system",
+    subtype: "task_notification",
+    task_id: "task-1",
+    status: "completed",
+    output_file: "/tmp/out.txt",
+    summary: "Task complete",
+    uuid: "uuid-task",
+    session_id: "sdk-session-task",
+  } as unknown as SDKMessage;
+
+  const summary = summarizeClaudeMessage(message, "summary");
+
+  assert.equal(summary.messageType, "system");
+  assert.equal(summary.messageSubtype, "task_notification");
+  assert.equal(summary.summary, "Task notification: completed.");
+  assert.equal(summary.data?.taskId, "task-1");
+});
+
+test("ClaudeObservabilityLogger honors includePartialMessages for stream events", () => {
+  const lines: string[] = [];
+  const originalLog = console.log;
+  console.log = (line?: unknown) => {
+    lines.push(String(line ?? ""));
+  };
+
+  try {
+    const context = {
+      sessionId: "session-stream",
+      nodeId: "node-stream",
+      attempt: 1,
+      depth: 0,
+    };
+    const streamMessage = {
+      type: "stream_event",
+      event: {
+        type: "content_block_delta",
+      },
+      parent_tool_use_id: null,
+      uuid: "stream-1",
+      session_id: "sdk-session-stream",
+    } as unknown as SDKMessage;
+
+    const withoutPartial = new ClaudeObservabilityLogger({
+      workspaceRoot: process.cwd(),
+      config: {
+        mode: "stdout",
+        verbosity: "summary",
+        logPath: ".ai_ops/events/claude-trace.ndjson",
+        includePartialMessages: false,
+        debug: false,
+      },
+    });
+    withoutPartial.recordMessage({
+      context,
+      message: streamMessage,
+    });
+
+    const withPartial = new ClaudeObservabilityLogger({
+      workspaceRoot: process.cwd(),
+      config: {
+        mode: "stdout",
+        verbosity: "summary",
+        logPath: ".ai_ops/events/claude-trace.ndjson",
+        includePartialMessages: true,
+        debug: false,
+      },
+    });
+    withPartial.recordMessage({
+      context,
+      message: streamMessage,
+    });
+
+    assert.equal(lines.length, 1);
+    assert.match(lines[0] ?? "", /\"sdkMessageType\":\"stream_event\"/);
+  } finally {
+    console.log = originalLog;
+  }
+});

tests/claude-trace-store.test.ts

@@ -0,0 +1,42 @@
+import test from "node:test";
+import assert from "node:assert/strict";
+import { mkdtemp, writeFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import { filterClaudeTraceEvents, readClaudeTraceEvents } from "../src/ui/claude-trace-store.js";
+
+test("readClaudeTraceEvents parses and sorts ndjson records", async () => {
+  const workspace = await mkdtemp(join(tmpdir(), "claude-trace-store-"));
+  const logPath = join(workspace, "claude-trace.ndjson");
+  await writeFile(
+    logPath,
+    [
+      '{"timestamp":"2026-02-24T17:27:05.000Z","message":"later","sessionId":"s1"}',
+      'not-json',
+      '{"timestamp":"2026-02-24T17:26:00.000Z","message":"earlier","sessionId":"s1"}',
+      '{"message":"missing timestamp"}',
+    ].join("\n"),
+    "utf8",
+  );
+
+  const events = await readClaudeTraceEvents(logPath);
+  assert.equal(events.length, 2);
+  assert.equal(events[0]?.message, "earlier");
+  assert.equal(events[1]?.message, "later");
+});
+
+test("filterClaudeTraceEvents filters by session and limit", () => {
+  const events = [
+    { timestamp: "2026-02-24T17:00:00.000Z", message: "a", sessionId: "s1" },
+    { timestamp: "2026-02-24T17:01:00.000Z", message: "b", sessionId: "s2" },
+    { timestamp: "2026-02-24T17:02:00.000Z", message: "c", sessionId: "s1" },
+  ];
+
+  const filtered = filterClaudeTraceEvents(events, {
+    sessionId: "s1",
+    limit: 1,
+  });
+
+  assert.equal(filtered.length, 1);
+  assert.equal(filtered[0]?.message, "c");
+});

tests/config.test.ts

@@ -12,6 +12,7 @@ test("loads defaults and freezes config", () => {
 
   assert.equal(config.agentManager.maxConcurrentAgents, 4);
   assert.equal(config.orchestration.maxDepth, 4);
+  assert.equal(config.orchestration.mergeConflictMaxAttempts, 2);
   assert.equal(config.provisioning.portRange.basePort, 36000);
   assert.equal(config.discovery.fileRelativePath, ".agent-context/resources.json");
   assert.equal(config.security.violationHandling, "hard_abort");
@@ -24,6 +25,11 @@ test("loads defaults and freezes config", () => {
     "session.failed",
   ]);
   assert.equal(config.provider.openAiAuthMode, "auto");
+  assert.equal(config.provider.claudeObservability.mode, "off");
+  assert.equal(config.provider.claudeObservability.verbosity, "summary");
+  assert.equal(config.provider.claudeObservability.logPath, ".ai_ops/events/claude-trace.ndjson");
+  assert.equal(config.provider.claudeObservability.includePartialMessages, false);
+  assert.equal(config.provider.claudeObservability.debug, false);
   assert.equal(Object.isFrozen(config), true);
   assert.equal(Object.isFrozen(config.orchestration), true);
 });
@@ -56,6 +62,38 @@ test("validates runtime discord severity mode", () => {
   );
 });
 
+test("validates claude observability mode", () => {
+  assert.throws(
+    () => loadConfig({ CLAUDE_OBSERVABILITY_MODE: "stream" }),
+    /CLAUDE_OBSERVABILITY_MODE must be one of/,
+  );
+});
+
+test("validates claude observability verbosity", () => {
+  assert.throws(
+    () => loadConfig({ CLAUDE_OBSERVABILITY_VERBOSITY: "verbose" }),
+    /CLAUDE_OBSERVABILITY_VERBOSITY must be one of/,
+  );
+});
+
+test("loads claude observability settings", () => {
+  const config = loadConfig({
+    CLAUDE_OBSERVABILITY_MODE: "both",
+    CLAUDE_OBSERVABILITY_VERBOSITY: "full",
+    CLAUDE_OBSERVABILITY_LOG_PATH: ".ai_ops/debug/claude.ndjson",
+    CLAUDE_OBSERVABILITY_INCLUDE_PARTIAL: "true",
+    CLAUDE_OBSERVABILITY_DEBUG: "true",
+    CLAUDE_OBSERVABILITY_DEBUG_LOG_PATH: ".ai_ops/debug/claude-sdk.log",
+  });
+
+  assert.equal(config.provider.claudeObservability.mode, "both");
+  assert.equal(config.provider.claudeObservability.verbosity, "full");
+  assert.equal(config.provider.claudeObservability.logPath, ".ai_ops/debug/claude.ndjson");
+  assert.equal(config.provider.claudeObservability.includePartialMessages, true);
+  assert.equal(config.provider.claudeObservability.debug, true);
+  assert.equal(config.provider.claudeObservability.debugLogPath, ".ai_ops/debug/claude-sdk.log");
+});
+
 test("prefers CLAUDE_CODE_OAUTH_TOKEN over ANTHROPIC_API_KEY", () => {
   const config = loadConfig({
     CLAUDE_CODE_OAUTH_TOKEN: "oauth-token",
@@ -127,3 +165,10 @@ test("validates AGENT_WORKTREE_TARGET_PATH against parent traversal", () => {
     /must not contain "\.\." path segments/,
   );
 });
+
+test("validates AGENT_MERGE_CONFLICT_MAX_ATTEMPTS bounds", () => {
+  assert.throws(
+    () => loadConfig({ AGENT_MERGE_CONFLICT_MAX_ATTEMPTS: "0" }),
+    /AGENT_MERGE_CONFLICT_MAX_ATTEMPTS must be an integer >= 1/,
+  );
+});

tests/orchestration-engine.test.ts

@@ -614,6 +614,7 @@ test("runs parallel topology blocks concurrently and routes via domain-event edg
           projectContextPatch: {
             enqueueTasks: [
               {
+                taskId: "task-integrate",
                 id: "task-integrate",
                 title: "Integrate feature branches",
                 status: "pending",

tests/project-context.test.ts

@@ -28,6 +28,7 @@ test("project context store reads defaults and applies domain patches", async ()
     },
     enqueueTasks: [
       {
+        taskId: "task-1",
         id: "task-1",
         title: "Build parser",
         status: "pending",
@@ -38,11 +39,13 @@ test("project context store reads defaults and applies domain patches", async ()
   const updated = await store.patchState({
     upsertTasks: [
       {
+        taskId: "task-1",
         id: "task-1",
         title: "Build parser",
         status: "in_progress",
       },
       {
+        taskId: "task-2",
         id: "task-2",
         title: "Add tests",
         status: "pending",
@@ -59,6 +62,35 @@ test("project context store reads defaults and applies domain patches", async ()
   assert.equal(updated.schemaVersion, 1);
 });
 
+test("project context accepts conflict-aware task statuses", async () => {
+  const root = await mkdtemp(resolve(tmpdir(), "ai-ops-project-context-conflict-"));
+  const store = new FileSystemProjectContextStore({
+    filePath: resolve(root, "project-context.json"),
+  });
+
+  const updated = await store.patchState({
+    upsertTasks: [
+      {
+        taskId: "task-conflict",
+        id: "task-conflict",
+        title: "Resolve merge conflict",
+        status: "conflict",
+      },
+      {
+        taskId: "task-resolving",
+        id: "task-resolving",
+        title: "Retry merge",
+        status: "resolving_conflict",
+      },
+    ],
+  });
+
+  assert.deepEqual(
+    updated.taskQueue.map((task) => `${task.taskId}:${task.status}`),
+    ["task-conflict:conflict", "task-resolving:resolving_conflict"],
+  );
+});
+
 test("project context parser merges missing root keys with defaults", async () => {
   const root = await mkdtemp(resolve(tmpdir(), "ai-ops-project-context-"));
   const filePath = resolve(root, "project-context.json");
@@ -70,6 +102,7 @@ test("project context parser merges missing root keys with defaults", async () =
       {
         taskQueue: [
           {
+            taskId: "task-1",
             id: "task-1",
             title: "Migrate",
             status: "pending",

tests/run-service.test.ts

@@ -1,10 +1,14 @@
 import test from "node:test";
 import assert from "node:assert/strict";
-import { mkdtemp, writeFile } from "node:fs/promises";
+import { execFile } from "node:child_process";
+import { mkdtemp, mkdir, stat, writeFile } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { resolve } from "node:path";
+import { promisify } from "node:util";
 import { UiRunService, readRunMetaBySession } from "../src/ui/run-service.js";
 
+const execFileAsync = promisify(execFile);
+
 async function waitForTerminalRun(
   runService: UiRunService,
   runId: string,
@@ -94,3 +98,140 @@ test("run service persists failure when pipeline summary is failure", async () =
   });
   assert.equal(persisted?.status, "failure");
 });
+
+test("run service creates, runs, and closes explicit sessions", async () => {
+  const workspaceRoot = await mkdtemp(resolve(tmpdir(), "ai-ops-run-service-session-"));
+  const stateRoot = resolve(workspaceRoot, "state");
+  const envPath = resolve(workspaceRoot, ".env");
+  const projectPath = resolve(workspaceRoot, "project");
+
+  await mkdir(projectPath, { recursive: true });
+  await execFileAsync("git", ["init", projectPath], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "config", "user.name", "AI Ops"], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "config", "user.email", "ai-ops@example.local"], { encoding: "utf8" });
+  await writeFile(resolve(projectPath, "README.md"), "# project\n", "utf8");
+  await execFileAsync("git", ["-C", projectPath, "add", "README.md"], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "commit", "-m", "initial"], { encoding: "utf8" });
+
+  await writeFile(
+    envPath,
+    [
+      `AGENT_STATE_ROOT=${stateRoot}`,
+      "AGENT_WORKTREE_ROOT=.ai_ops/worktrees",
+      "AGENT_WORKTREE_BASE_REF=HEAD",
+    ].join("\n"),
+    "utf8",
+  );
+
+  const runService = new UiRunService({
+    workspaceRoot,
+    envFilePath: ".env",
+  });
+
+  const createdSession = await runService.createSession({
+    projectPath,
+  });
+  assert.equal(createdSession.sessionStatus, "active");
+
+  const manifest = {
+    schemaVersion: "1",
+    topologies: ["sequential"],
+    personas: [
+      {
+        id: "writer",
+        displayName: "Writer",
+        systemPromptTemplate: "Write draft",
+        toolClearance: {
+          allowlist: ["read_file", "write_file"],
+          banlist: [],
+        },
+      },
+    ],
+    relationships: [],
+    topologyConstraints: {
+      maxDepth: 1,
+      maxRetries: 0,
+    },
+    pipeline: {
+      entryNodeId: "write-node",
+      nodes: [
+        {
+          id: "write-node",
+          actorId: "writer-actor",
+          personaId: "writer",
+        },
+      ],
+      edges: [],
+    },
+  };
+
+  const started = await runService.startRun({
+    prompt: "complete task",
+    manifest,
+    sessionId: createdSession.sessionId,
+    executionMode: "mock",
+  });
+
+  const terminalStatus = await waitForTerminalRun(runService, started.runId);
+  assert.equal(terminalStatus, "success");
+
+  const closed = await runService.closeSession({
+    sessionId: createdSession.sessionId,
+  });
+  assert.equal(closed.sessionStatus, "closed");
+
+  await assert.rejects(() => stat(createdSession.baseWorkspacePath), {
+    code: "ENOENT",
+  });
+});
+
+test("run service marks session closed_with_conflicts when close merge conflicts", async () => {
+  const workspaceRoot = await mkdtemp(resolve(tmpdir(), "ai-ops-run-service-close-conflict-"));
+  const stateRoot = resolve(workspaceRoot, "state");
+  const envPath = resolve(workspaceRoot, ".env");
+  const projectPath = resolve(workspaceRoot, "project");
+
+  await mkdir(projectPath, { recursive: true });
+  await execFileAsync("git", ["init", projectPath], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "config", "user.name", "AI Ops"], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "config", "user.email", "ai-ops@example.local"], { encoding: "utf8" });
+  await writeFile(resolve(projectPath, "README.md"), "base\n", "utf8");
+  await execFileAsync("git", ["-C", projectPath, "add", "README.md"], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "commit", "-m", "initial"], { encoding: "utf8" });
+
+  await writeFile(
+    envPath,
+    [
+      `AGENT_STATE_ROOT=${stateRoot}`,
+      "AGENT_WORKTREE_ROOT=.ai_ops/worktrees",
+      "AGENT_WORKTREE_BASE_REF=HEAD",
+    ].join("\n"),
+    "utf8",
+  );
+
+  const runService = new UiRunService({
+    workspaceRoot,
+    envFilePath: ".env",
+  });
+
+  const createdSession = await runService.createSession({
+    projectPath,
+  });
+
+  await writeFile(resolve(createdSession.baseWorkspacePath, "README.md"), "base branch update\n", "utf8");
+  await execFileAsync("git", ["-C", createdSession.baseWorkspacePath, "add", "README.md"], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", createdSession.baseWorkspacePath, "commit", "-m", "base update"], { encoding: "utf8" });
+
+  await writeFile(resolve(projectPath, "README.md"), "project branch update\n", "utf8");
+  await execFileAsync("git", ["-C", projectPath, "add", "README.md"], { encoding: "utf8" });
+  await execFileAsync("git", ["-C", projectPath, "commit", "-m", "project update"], { encoding: "utf8" });
+
+  const closed = await runService.closeSession({
+    sessionId: createdSession.sessionId,
+    mergeToProject: true,
+  });
+
+  assert.equal(closed.sessionStatus, "closed_with_conflicts");
+  const baseWorkspaceStats = await stat(createdSession.baseWorkspacePath);
+  assert.equal(baseWorkspaceStats.isDirectory(), true);
+});

tests/security-middleware.test.ts

@@ -155,3 +155,41 @@ test("secure executor runs with explicit env policy", async () => {
   assert.equal(result.stdout, "ok|\n");
   assert.equal(streamedStdout, result.stdout);
 });
+
+test("rules engine carries session context in tool audit events", () => {
+  const events: Array<Record<string, unknown>> = [];
+  const rules = new SecurityRulesEngine(
+    {
+      allowedBinaries: ["git"],
+      worktreeRoot: "/tmp",
+      protectedPaths: [],
+      requireCwdWithinWorktree: true,
+      rejectRelativePathTraversal: true,
+      enforcePathBoundaryOnArguments: true,
+      allowedEnvAssignments: [],
+      blockedEnvAssignments: [],
+    },
+    (event) => {
+      events.push(event as unknown as Record<string, unknown>);
+    },
+  );
+
+  rules.assertToolInvocationAllowed({
+    tool: "git",
+    toolClearance: {
+      allowlist: ["git"],
+      banlist: [],
+    },
+    context: {
+      sessionId: "session-ctx",
+      nodeId: "node-ctx",
+      attempt: 2,
+    },
+  });
+
+  const allowedEvent = events.find((event) => event.type === "tool.invocation_allowed");
+  assert.ok(allowedEvent);
+  assert.equal(allowedEvent.sessionId, "session-ctx");
+  assert.equal(allowedEvent.nodeId, "node-ctx");
+  assert.equal(allowedEvent.attempt, 2);
+});

tests/session-lifecycle.test.ts

@@ -0,0 +1,230 @@
+import test from "node:test";
+import assert from "node:assert/strict";
+import { execFile } from "node:child_process";
+import { mkdtemp, mkdir, readFile, rm, stat, writeFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { resolve } from "node:path";
+import { promisify } from "node:util";
+import {
+  FileSystemSessionMetadataStore,
+  SessionWorktreeManager,
+  type SessionMetadata,
+} from "../src/agents/session-lifecycle.js";
+
+const execFileAsync = promisify(execFile);
+
+async function git(args: string[]): Promise<string> {
+  const { stdout } = await execFileAsync("git", args, {
+    encoding: "utf8",
+  });
+  return stdout.trim();
+}
+
+test("session metadata store persists and updates session metadata", async () => {
+  const stateRoot = await mkdtemp(resolve(tmpdir(), "ai-ops-session-store-"));
+  const store = new FileSystemSessionMetadataStore({ stateRoot });
+
+  const created = await store.createSession({
+    sessionId: "session-abc",
+    projectPath: resolve(stateRoot, "project"),
+    baseWorkspacePath: resolve(stateRoot, "worktrees", "session-abc", "base"),
+  });
+
+  assert.equal(created.sessionStatus, "active");
+  assert.equal(created.sessionId, "session-abc");
+
+  const listed = await store.listSessions();
+  assert.equal(listed.length, 1);
+  assert.equal(listed[0]?.sessionId, "session-abc");
+
+  const updated = await store.updateSession("session-abc", {
+    sessionStatus: "closed",
+  });
+  assert.equal(updated.sessionStatus, "closed");
+
+  const readBack = await store.readSession("session-abc");
+  assert.equal(readBack?.sessionStatus, "closed");
+
+  const closedWithConflicts = await store.updateSession("session-abc", {
+    sessionStatus: "closed_with_conflicts",
+  });
+  assert.equal(closedWithConflicts.sessionStatus, "closed_with_conflicts");
+});
+
+test("session worktree manager provisions and merges task worktrees", async () => {
+  const root = await mkdtemp(resolve(tmpdir(), "ai-ops-session-worktree-"));
+  const projectPath = resolve(root, "project");
+  const worktreeRoot = resolve(root, "worktrees");
+
+  await mkdir(projectPath, { recursive: true });
+  await git(["init", projectPath]);
+  await git(["-C", projectPath, "config", "user.name", "AI Ops"]);
+  await git(["-C", projectPath, "config", "user.email", "ai-ops@example.local"]);
+  await writeFile(resolve(projectPath, "README.md"), "# project\n", "utf8");
+  await git(["-C", projectPath, "add", "README.md"]);
+  await git(["-C", projectPath, "commit", "-m", "initial commit"]);
+
+  const manager = new SessionWorktreeManager({
+    worktreeRoot,
+    baseRef: "HEAD",
+  });
+
+  const sessionId = "session-1";
+  const baseWorkspacePath = manager.resolveBaseWorkspacePath(sessionId);
+
+  await manager.initializeSessionBaseWorkspace({
+    sessionId,
+    projectPath,
+    baseWorkspacePath,
+  });
+
+  const baseStats = await stat(baseWorkspacePath);
+  assert.equal(baseStats.isDirectory(), true);
+
+  const taskWorktreePath = (
+    await manager.ensureTaskWorktree({
+      sessionId,
+      taskId: "task-1",
+      baseWorkspacePath,
+    })
+  ).taskWorktreePath;
+
+  await writeFile(resolve(taskWorktreePath, "feature.txt"), "task output\n", "utf8");
+
+  const mergeOutcome = await manager.mergeTaskIntoBase({
+    taskId: "task-1",
+    baseWorkspacePath,
+    taskWorktreePath,
+  });
+  assert.equal(mergeOutcome.kind, "success");
+
+  const mergedFile = await readFile(resolve(baseWorkspacePath, "feature.txt"), "utf8");
+  assert.equal(mergedFile, "task output\n");
+
+  const session: SessionMetadata = {
+    sessionId,
+    projectPath,
+    baseWorkspacePath,
+    sessionStatus: "active",
+    createdAt: new Date().toISOString(),
+    updatedAt: new Date().toISOString(),
+  };
+
+  const closeOutcome = await manager.closeSession({
+    session,
+    taskWorktreePaths: [],
+    mergeBaseIntoProject: false,
+  });
+  assert.equal(closeOutcome.kind, "success");
+
+  await assert.rejects(() => stat(baseWorkspacePath), {
+    code: "ENOENT",
+  });
+});
+
+test("session worktree manager returns conflict outcome instead of throwing", async () => {
+  const root = await mkdtemp(resolve(tmpdir(), "ai-ops-session-worktree-conflict-"));
+  const projectPath = resolve(root, "project");
+  const worktreeRoot = resolve(root, "worktrees");
+
+  await mkdir(projectPath, { recursive: true });
+  await git(["init", projectPath]);
+  await git(["-C", projectPath, "config", "user.name", "AI Ops"]);
+  await git(["-C", projectPath, "config", "user.email", "ai-ops@example.local"]);
+  await writeFile(resolve(projectPath, "README.md"), "base\n", "utf8");
+  await git(["-C", projectPath, "add", "README.md"]);
+  await git(["-C", projectPath, "commit", "-m", "initial commit"]);
+
+  const manager = new SessionWorktreeManager({
+    worktreeRoot,
+    baseRef: "HEAD",
+  });
+
+  const sessionId = "session-conflict-1";
+  const baseWorkspacePath = manager.resolveBaseWorkspacePath(sessionId);
+
+  await manager.initializeSessionBaseWorkspace({
+    sessionId,
+    projectPath,
+    baseWorkspacePath,
+  });
+
+  const taskWorktreePath = (
+    await manager.ensureTaskWorktree({
+      sessionId,
+      taskId: "task-conflict",
+      baseWorkspacePath,
+    })
+  ).taskWorktreePath;
+
+  await writeFile(resolve(baseWorkspacePath, "README.md"), "base branch change\n", "utf8");
+  await git(["-C", baseWorkspacePath, "add", "README.md"]);
+  await git(["-C", baseWorkspacePath, "commit", "-m", "base update"]);
+
+  await writeFile(resolve(taskWorktreePath, "README.md"), "task branch change\n", "utf8");
+
+  const mergeOutcome = await manager.mergeTaskIntoBase({
+    taskId: "task-conflict",
+    baseWorkspacePath,
+    taskWorktreePath,
+  });
+
+  assert.equal(mergeOutcome.kind, "conflict");
+  if (mergeOutcome.kind !== "conflict") {
+    throw new Error("Expected merge conflict outcome.");
+  }
+  assert.equal(mergeOutcome.taskId, "task-conflict");
+  assert.equal(mergeOutcome.worktreePath, taskWorktreePath);
+  assert.ok(mergeOutcome.conflictFiles.includes("README.md"));
+});
+
+test("session worktree manager recreates a task worktree after stale metadata prune", async () => {
+  const root = await mkdtemp(resolve(tmpdir(), "ai-ops-session-worktree-prune-"));
+  const projectPath = resolve(root, "project");
+  const worktreeRoot = resolve(root, "worktrees");
+
+  await mkdir(projectPath, { recursive: true });
+  await git(["init", projectPath]);
+  await git(["-C", projectPath, "config", "user.name", "AI Ops"]);
+  await git(["-C", projectPath, "config", "user.email", "ai-ops@example.local"]);
+  await writeFile(resolve(projectPath, "README.md"), "# project\n", "utf8");
+  await git(["-C", projectPath, "add", "README.md"]);
+  await git(["-C", projectPath, "commit", "-m", "initial commit"]);
+
+  const manager = new SessionWorktreeManager({
+    worktreeRoot,
+    baseRef: "HEAD",
+  });
+
+  const sessionId = "session-prune-1";
+  const taskId = "task-prune-1";
+  const baseWorkspacePath = manager.resolveBaseWorkspacePath(sessionId);
+
+  await manager.initializeSessionBaseWorkspace({
+    sessionId,
+    projectPath,
+    baseWorkspacePath,
+  });
+
+  const initialTaskWorktreePath = (
+    await manager.ensureTaskWorktree({
+      sessionId,
+      taskId,
+      baseWorkspacePath,
+    })
+  ).taskWorktreePath;
+
+  await rm(initialTaskWorktreePath, { recursive: true, force: true });
+
+  const recreatedTaskWorktreePath = (
+    await manager.ensureTaskWorktree({
+      sessionId,
+      taskId,
+      baseWorkspacePath,
+    })
+  ).taskWorktreePath;
+
+  assert.equal(recreatedTaskWorktreePath, initialTaskWorktreePath);
+  const stats = await stat(recreatedTaskWorktreePath);
+  assert.equal(stats.isDirectory(), true);
+});